Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4810 and Psyr_4811 are separated by 0 nucleotides Psyr_4811 and Psyr_4812 are separated by 234 nucleotides
Psyr_4810: Psyr_4810 - sodium/proton antiporter, CPA1 family, at 5,704,737 to 5,705,996
_4810
Psyr_4811: Psyr_4811 - transcriptional regulator, AraC family, at 5,705,997 to 5,706,944
_4811
Psyr_4812: Psyr_4812 - sorbitol-binding protein / mannitol-binding protein, at 5,707,179 to 5,708,495
_4812
Position (kb) 5705
5706
5707 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5705.017 kb on - strand, within Psyr_4810 at 5705.017 kb on - strand, within Psyr_4810 at 5705.130 kb on + strand, within Psyr_4810 at 5705.130 kb on + strand, within Psyr_4810 at 5705.131 kb on - strand, within Psyr_4810 at 5705.131 kb on - strand, within Psyr_4810 at 5705.131 kb on - strand, within Psyr_4810 at 5705.131 kb on - strand, within Psyr_4810 at 5705.397 kb on + strand, within Psyr_4810 at 5705.398 kb on - strand, within Psyr_4810 at 5705.424 kb on + strand, within Psyr_4810 at 5705.425 kb on - strand, within Psyr_4810 at 5705.580 kb on + strand, within Psyr_4810 at 5705.581 kb on - strand, within Psyr_4810 at 5705.581 kb on - strand, within Psyr_4810 at 5705.581 kb on - strand, within Psyr_4810 at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.892 kb on + strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5705.893 kb on - strand at 5706.180 kb on - strand, within Psyr_4811 at 5706.266 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.796 kb on + strand, within Psyr_4811 at 5706.843 kb on - strand, within Psyr_4811 at 5706.944 kb on + strand at 5706.944 kb on + strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.969 kb on - strand at 5706.969 kb on - strand at 5706.993 kb on + strand at 5706.994 kb on - strand at 5707.039 kb on - strand at 5707.089 kb on - strand at 5707.089 kb on - strand at 5707.175 kb on + strand at 5707.175 kb on + strand at 5707.176 kb on - strand at 5707.430 kb on - strand, within Psyr_4812 at 5707.430 kb on - strand, within Psyr_4812 at 5707.446 kb on + strand, within Psyr_4812 at 5707.446 kb on + strand, within Psyr_4812 at 5707.447 kb on - strand, within Psyr_4812 at 5707.509 kb on + strand, within Psyr_4812 at 5707.523 kb on + strand, within Psyr_4812 at 5707.524 kb on - strand, within Psyr_4812 at 5707.569 kb on + strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.585 kb on - strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand at 5707.606 kb on - strand, within Psyr_4812 at 5707.697 kb on + strand, within Psyr_4812 at 5707.697 kb on + strand, within Psyr_4812 at 5707.697 kb on + strand, within Psyr_4812 at 5707.698 kb on - strand, within Psyr_4812 at 5707.698 kb on - strand, within Psyr_4812 at 5707.885 kb on - strand, within Psyr_4812
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,705,017 - Psyr_4810 0.22 -0.5 5,705,017 - Psyr_4810 0.22 +0.7 5,705,130 + Psyr_4810 0.31 +1.0 5,705,130 + Psyr_4810 0.31 -0.6 5,705,131 - Psyr_4810 0.31 +0.7 5,705,131 - Psyr_4810 0.31 -0.2 5,705,131 - Psyr_4810 0.31 -0.4 5,705,131 - Psyr_4810 0.31 +1.8 5,705,397 + Psyr_4810 0.52 -0.1 5,705,398 - Psyr_4810 0.52 +0.9 5,705,424 + Psyr_4810 0.55 -0.2 5,705,425 - Psyr_4810 0.55 -0.2 5,705,580 + Psyr_4810 0.67 -0.2 5,705,581 - Psyr_4810 0.67 -1.2 5,705,581 - Psyr_4810 0.67 +0.4 5,705,581 - Psyr_4810 0.67 +0.1 5,705,892 + +0.2 5,705,892 + +0.5 5,705,892 + +0.4 5,705,892 + +2.0 5,705,892 + -1.7 5,705,892 + +0.4 5,705,892 + -1.1 5,705,892 + +0.2 5,705,893 - +0.1 5,705,893 - +0.1 5,705,893 - +0.4 5,705,893 - -1.6 5,705,893 - +2.5 5,706,180 - Psyr_4811 0.19 +0.1 5,706,266 + Psyr_4811 0.28 +0.3 5,706,706 + Psyr_4811 0.75 +0.8 5,706,706 + Psyr_4811 0.75 +0.3 5,706,706 + Psyr_4811 0.75 +0.2 5,706,706 + Psyr_4811 0.75 +0.1 5,706,706 + Psyr_4811 0.75 +0.7 5,706,707 - Psyr_4811 0.75 +0.3 5,706,707 - Psyr_4811 0.75 +0.5 5,706,707 - Psyr_4811 0.75 +1.2 5,706,707 - Psyr_4811 0.75 +0.9 5,706,707 - Psyr_4811 0.75 +0.4 5,706,707 - Psyr_4811 0.75 +0.2 5,706,796 + Psyr_4811 0.84 -0.4 5,706,843 - Psyr_4811 0.89 -0.3 5,706,944 + -1.0 5,706,944 + +0.0 5,706,945 - -0.3 5,706,945 - -0.4 5,706,945 - -1.0 5,706,945 - +0.1 5,706,945 - -0.7 5,706,945 - -0.0 5,706,945 - +0.8 5,706,969 - +0.1 5,706,969 - +0.8 5,706,993 + +0.7 5,706,994 - -2.4 5,707,039 - -0.5 5,707,089 - -0.6 5,707,089 - -0.2 5,707,175 + +1.0 5,707,175 + -1.5 5,707,176 - -0.4 5,707,430 - Psyr_4812 0.19 +0.3 5,707,430 - Psyr_4812 0.19 +0.1 5,707,446 + Psyr_4812 0.20 -0.6 5,707,446 + Psyr_4812 0.20 -0.3 5,707,447 - Psyr_4812 0.20 -0.4 5,707,509 + Psyr_4812 0.25 +0.6 5,707,523 + Psyr_4812 0.26 -0.6 5,707,524 - Psyr_4812 0.26 +0.5 5,707,569 + Psyr_4812 0.30 -0.1 5,707,570 - Psyr_4812 0.30 -1.3 5,707,570 - Psyr_4812 0.30 +0.5 5,707,570 - Psyr_4812 0.30 +0.0 5,707,570 - Psyr_4812 0.30 +0.0 5,707,585 - Psyr_4812 0.31 -0.5 5,707,601 + Psyr_4812 0.32 -0.1 5,707,601 + Psyr_4812 0.32 +0.1 5,707,601 + Psyr_4812 0.32 +0.2 5,707,601 + Psyr_4812 0.32 -0.6 5,707,602 - Psyr_4812 0.32 -0.0 5,707,602 - Psyr_4812 0.32 +0.1 5,707,602 - Psyr_4812 0.32 +0.2 5,707,602 - Psyr_4812 0.32 +0.3 5,707,602 - Psyr_4812 0.32 +1.0 5,707,602 - Psyr_4812 0.32 +0.2 5,707,602 - Psyr_4812 0.32 +1.0 5,707,602 - Psyr_4812 0.32 -1.0 5,707,602 - Psyr_4812 0.32 -1.1 5,707,602 - Psyr_4812 0.32 +0.0 5,707,602 - Psyr_4812 0.32 -0.4 5,707,605 + Psyr_4812 0.32 -1.0 5,707,605 + Psyr_4812 0.32 +1.8 5,707,605 + Psyr_4812 0.32 +0.2 5,707,605 + Psyr_4812 0.32 +1.9 5,707,606 - Psyr_4812 0.32 +3.1 5,707,606 - Psyr_4812 0.32 -0.9 5,707,606 - Psyr_4812 0.32 -1.2 5,707,606 - Psyr_4812 0.32 +0.4 5,707,606 - +2.5 5,707,606 - Psyr_4812 0.32 -0.1 5,707,697 + Psyr_4812 0.39 +0.0 5,707,697 + Psyr_4812 0.39 -0.3 5,707,697 + Psyr_4812 0.39 -0.6 5,707,698 - Psyr_4812 0.39 -1.5 5,707,698 - Psyr_4812 0.39 +1.5 5,707,885 - Psyr_4812 0.54 -0.8
Or see this region's nucleotide sequence