Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4750

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4749 and Psyr_4750 overlap by 4 nucleotidesPsyr_4750 and Psyr_4751 overlap by 4 nucleotides Psyr_4749: Psyr_4749 - cell division protein FtsX, at 5,624,736 to 5,625,770 _4749 Psyr_4750: Psyr_4750 - cell division ATP-binding protein FtsE, at 5,625,767 to 5,626,438 _4750 Psyr_4751: Psyr_4751 - signal recognition particle-docking protein FtsY, at 5,626,435 to 5,627,952 _4751 Position (kb) 5625 5626 5627Strain fitness (log2 ratio) -1 0 1 2at 5624.792 kb on - strandat 5624.792 kb on - strandat 5624.792 kb on - strandat 5624.869 kb on + strand, within Psyr_4749at 5624.917 kb on + strand, within Psyr_4749at 5624.918 kb on - strand, within Psyr_4749at 5624.972 kb on + strand, within Psyr_4749at 5624.973 kb on - strand, within Psyr_4749at 5624.974 kb on + strand, within Psyr_4749at 5624.974 kb on + strand, within Psyr_4749at 5624.974 kb on + strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.975 kb on - strand, within Psyr_4749at 5624.995 kb on + strand, within Psyr_4749at 5624.995 kb on + strand, within Psyr_4749at 5624.995 kb on + strand, within Psyr_4749at 5624.995 kb on + strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5624.996 kb on - strand, within Psyr_4749at 5625.057 kb on + strand, within Psyr_4749at 5625.058 kb on - strand, within Psyr_4749at 5625.058 kb on - strand, within Psyr_4749at 5625.078 kb on + strand, within Psyr_4749at 5625.078 kb on + strand, within Psyr_4749at 5625.078 kb on + strand, within Psyr_4749at 5625.078 kb on + strand, within Psyr_4749at 5625.079 kb on - strand, within Psyr_4749at 5625.079 kb on - strand, within Psyr_4749at 5625.079 kb on - strand, within Psyr_4749at 5625.193 kb on - strand, within Psyr_4749at 5625.193 kb on - strand, within Psyr_4749at 5625.193 kb on - strand, within Psyr_4749at 5625.264 kb on + strand, within Psyr_4749at 5625.264 kb on + strand, within Psyr_4749at 5625.364 kb on + strand, within Psyr_4749at 5625.364 kb on + strand, within Psyr_4749at 5625.364 kb on + strand, within Psyr_4749at 5625.364 kb on + strand, within Psyr_4749at 5625.364 kb on + strand, within Psyr_4749at 5625.364 kb on + strand, within Psyr_4749at 5625.365 kb on - strand, within Psyr_4749at 5625.365 kb on - strand, within Psyr_4749at 5625.365 kb on - strand, within Psyr_4749at 5625.365 kb on - strand, within Psyr_4749at 5625.449 kb on - strand, within Psyr_4749at 5625.449 kb on - strand, within Psyr_4749at 5625.561 kb on - strand, within Psyr_4749at 5625.770 kb on + strandat 5625.770 kb on + strandat 5625.771 kb on - strandat 5625.771 kb on - strandat 5625.771 kb on - strandat 5625.771 kb on - strandat 5625.892 kb on + strand, within Psyr_4750at 5626.038 kb on + strand, within Psyr_4750at 5626.364 kb on + strand, within Psyr_4750

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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5,624,792 - +0.1
5,624,792 - -0.5
5,624,792 - +0.5
5,624,869 + Psyr_4749 0.13 -0.4
5,624,917 + Psyr_4749 0.17 +0.2
5,624,918 - Psyr_4749 0.18 +0.2
5,624,972 + Psyr_4749 0.23 +0.9
5,624,973 - Psyr_4749 0.23 +0.2
5,624,974 + Psyr_4749 0.23 -0.2
5,624,974 + Psyr_4749 0.23 -0.1
5,624,974 + Psyr_4749 0.23 +0.5
5,624,975 - Psyr_4749 0.23 -0.3
5,624,975 - Psyr_4749 0.23 +0.9
5,624,975 - Psyr_4749 0.23 -0.5
5,624,975 - Psyr_4749 0.23 +0.4
5,624,975 - Psyr_4749 0.23 +0.4
5,624,975 - Psyr_4749 0.23 -0.9
5,624,975 - Psyr_4749 0.23 +0.9
5,624,975 - Psyr_4749 0.23 +0.7
5,624,975 - Psyr_4749 0.23 +0.5
5,624,995 + Psyr_4749 0.25 +0.2
5,624,995 + Psyr_4749 0.25 +0.6
5,624,995 + Psyr_4749 0.25 -0.5
5,624,995 + Psyr_4749 0.25 +0.2
5,624,996 - Psyr_4749 0.25 +0.3
5,624,996 - Psyr_4749 0.25 +0.7
5,624,996 - Psyr_4749 0.25 -0.3
5,624,996 - Psyr_4749 0.25 -0.1
5,624,996 - Psyr_4749 0.25 +0.9
5,624,996 - Psyr_4749 0.25 -0.3
5,624,996 - Psyr_4749 0.25 -0.4
5,624,996 - Psyr_4749 0.25 +0.4
5,624,996 - Psyr_4749 0.25 +0.0
5,624,996 - Psyr_4749 0.25 +0.1
5,624,996 - Psyr_4749 0.25 -0.1
5,624,996 - Psyr_4749 0.25 -0.3
5,624,996 - Psyr_4749 0.25 -0.1
5,624,996 - Psyr_4749 0.25 -0.5
5,624,996 - Psyr_4749 0.25 -0.1
5,624,996 - Psyr_4749 0.25 +0.0
5,624,996 - Psyr_4749 0.25 +0.2
5,624,996 - Psyr_4749 0.25 -1.6
5,625,057 + Psyr_4749 0.31 -0.1
5,625,058 - Psyr_4749 0.31 +0.2
5,625,058 - Psyr_4749 0.31 +0.2
5,625,078 + Psyr_4749 0.33 -0.4
5,625,078 + Psyr_4749 0.33 +0.6
5,625,078 + Psyr_4749 0.33 -1.3
5,625,078 + Psyr_4749 0.33 -0.3
5,625,079 - Psyr_4749 0.33 +0.5
5,625,079 - Psyr_4749 0.33 +0.6
5,625,079 - Psyr_4749 0.33 -0.7
5,625,193 - Psyr_4749 0.44 -0.5
5,625,193 - Psyr_4749 0.44 +0.2
5,625,193 - Psyr_4749 0.44 +0.6
5,625,264 + Psyr_4749 0.51 -0.4
5,625,264 + Psyr_4749 0.51 +0.4
5,625,364 + Psyr_4749 0.61 -1.3
5,625,364 + Psyr_4749 0.61 +2.5
5,625,364 + Psyr_4749 0.61 +0.4
5,625,364 + Psyr_4749 0.61 -0.1
5,625,364 + Psyr_4749 0.61 -0.4
5,625,364 + Psyr_4749 0.61 -1.3
5,625,365 - Psyr_4749 0.61 -0.7
5,625,365 - Psyr_4749 0.61 -0.4
5,625,365 - Psyr_4749 0.61 -1.0
5,625,365 - Psyr_4749 0.61 -1.6
5,625,449 - Psyr_4749 0.69 -0.8
5,625,449 - Psyr_4749 0.69 -0.6
5,625,561 - Psyr_4749 0.80 +1.5
5,625,770 + -0.5
5,625,770 + -0.6
5,625,771 - +0.1
5,625,771 - +0.5
5,625,771 - +0.9
5,625,771 - +0.4
5,625,892 + Psyr_4750 0.19 -0.6
5,626,038 + Psyr_4750 0.40 -0.8
5,626,364 + Psyr_4750 0.89 -0.9

Or see this region's nucleotide sequence