Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4746

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4744 and Psyr_4745 are separated by 148 nucleotidesPsyr_4745 and Psyr_4746 are separated by 200 nucleotidesPsyr_4746 and Psyr_4747 are separated by 9 nucleotidesPsyr_4747 and Psyr_4748 are separated by 437 nucleotides Psyr_4744: Psyr_4744 - hypothetical protein, at 5,621,886 to 5,622,131 _4744 Psyr_4745: Psyr_4745 - hypothetical protein, at 5,622,280 to 5,622,621 _4745 Psyr_4746: Psyr_4746 - hypothetical protein, at 5,622,822 to 5,623,067 _4746 Psyr_4747: Psyr_4747 - hypothetical protein, at 5,623,077 to 5,623,325 _4747 Psyr_4748: Psyr_4748 - RNA polymerase, sigma 32 subunit, RpoH, at 5,623,763 to 5,624,617 _4748 Position (kb) 5622 5623 5624Strain fitness (log2 ratio) -2 -1 0 1at 5622.824 kb on - strandat 5623.555 kb on + strandat 5623.641 kb on + strandat 5623.649 kb on + strandat 5623.649 kb on + strandat 5623.649 kb on + strandat 5623.650 kb on - strandat 5623.650 kb on - strandat 5623.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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5,622,824 - +0.4
5,623,555 + -0.2
5,623,641 + -2.1
5,623,649 + +0.0
5,623,649 + -0.4
5,623,649 + -0.1
5,623,650 - +0.0
5,623,650 - -1.0
5,623,657 + +0.1

Or see this region's nucleotide sequence