Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4733 and Psyr_4734 are separated by 102 nucleotides Psyr_4734 and Psyr_4735 are separated by 445 nucleotides
Psyr_4733: Psyr_4733 - betaine aldehyde dehydrogenase, at 5,611,366 to 5,612,838
_4733
Psyr_4734: Psyr_4734 - transcriptional regulator, TetR family, at 5,612,941 to 5,613,534
_4734
Psyr_4735: Psyr_4735 - GTP-binding protein, HSR1-related protein, at 5,613,980 to 5,615,368
_4735
Position (kb) 5612
5613
5614 Strain fitness (log2 ratio) -2
-1
0
1 at 5612.000 kb on + strand, within Psyr_4733 at 5612.000 kb on + strand, within Psyr_4733 at 5612.001 kb on - strand, within Psyr_4733 at 5612.001 kb on - strand, within Psyr_4733 at 5612.074 kb on - strand, within Psyr_4733 at 5612.080 kb on + strand, within Psyr_4733 at 5612.080 kb on + strand, within Psyr_4733 at 5612.080 kb on + strand, within Psyr_4733 at 5612.236 kb on + strand, within Psyr_4733 at 5612.236 kb on + strand, within Psyr_4733 at 5612.265 kb on - strand, within Psyr_4733 at 5612.265 kb on - strand, within Psyr_4733 at 5612.429 kb on + strand, within Psyr_4733 at 5612.429 kb on + strand, within Psyr_4733 at 5612.429 kb on + strand, within Psyr_4733 at 5612.430 kb on - strand, within Psyr_4733 at 5612.430 kb on - strand, within Psyr_4733 at 5612.492 kb on + strand, within Psyr_4733 at 5612.493 kb on - strand, within Psyr_4733 at 5612.493 kb on - strand, within Psyr_4733 at 5612.493 kb on - strand, within Psyr_4733 at 5612.495 kb on + strand, within Psyr_4733 at 5612.495 kb on + strand, within Psyr_4733 at 5612.496 kb on - strand, within Psyr_4733 at 5612.496 kb on - strand, within Psyr_4733 at 5612.496 kb on - strand, within Psyr_4733 at 5612.531 kb on + strand, within Psyr_4733 at 5612.531 kb on + strand, within Psyr_4733 at 5612.795 kb on + strand at 5612.795 kb on + strand at 5612.796 kb on - strand at 5612.796 kb on - strand at 5612.810 kb on + strand at 5612.810 kb on + strand at 5612.838 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.911 kb on - strand at 5612.911 kb on - strand at 5612.911 kb on - strand at 5612.911 kb on - strand at 5612.975 kb on + strand at 5612.975 kb on + strand at 5612.975 kb on + strand at 5612.975 kb on + strand at 5612.976 kb on - strand at 5612.976 kb on - strand at 5612.976 kb on - strand at 5612.981 kb on + strand at 5613.413 kb on - strand, within Psyr_4734 at 5613.571 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.912 kb on - strand at 5613.912 kb on - strand at 5614.527 kb on + strand, within Psyr_4735 at 5614.528 kb on - strand, within Psyr_4735
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,612,000 + Psyr_4733 0.43 +1.1 5,612,000 + Psyr_4733 0.43 -0.1 5,612,001 - Psyr_4733 0.43 +0.4 5,612,001 - Psyr_4733 0.43 -0.2 5,612,074 - Psyr_4733 0.48 -0.8 5,612,080 + Psyr_4733 0.48 +0.4 5,612,080 + Psyr_4733 0.48 -0.5 5,612,080 + Psyr_4733 0.48 -0.7 5,612,236 + Psyr_4733 0.59 -0.4 5,612,236 + Psyr_4733 0.59 +0.1 5,612,265 - Psyr_4733 0.61 +0.8 5,612,265 - Psyr_4733 0.61 -1.0 5,612,429 + Psyr_4733 0.72 +1.1 5,612,429 + Psyr_4733 0.72 -0.2 5,612,429 + Psyr_4733 0.72 +0.3 5,612,430 - Psyr_4733 0.72 -0.6 5,612,430 - Psyr_4733 0.72 +1.3 5,612,492 + Psyr_4733 0.76 -1.5 5,612,493 - Psyr_4733 0.77 -0.5 5,612,493 - Psyr_4733 0.77 -0.4 5,612,493 - Psyr_4733 0.77 +0.3 5,612,495 + Psyr_4733 0.77 +0.2 5,612,495 + Psyr_4733 0.77 -1.4 5,612,496 - Psyr_4733 0.77 -0.3 5,612,496 - Psyr_4733 0.77 -0.5 5,612,496 - Psyr_4733 0.77 -0.9 5,612,531 + Psyr_4733 0.79 +0.6 5,612,531 + Psyr_4733 0.79 -0.9 5,612,795 + -1.4 5,612,795 + -0.5 5,612,796 - -0.6 5,612,796 - +1.2 5,612,810 + +0.1 5,612,810 + +0.8 5,612,838 + -1.3 5,612,910 + -0.8 5,612,910 + -0.5 5,612,910 + -2.2 5,612,910 + +0.7 5,612,910 + +0.0 5,612,911 - +0.2 5,612,911 - -0.5 5,612,911 - +0.1 5,612,911 - -0.4 5,612,975 + +0.5 5,612,975 + -1.6 5,612,975 + +0.2 5,612,975 + +1.5 5,612,976 - +0.7 5,612,976 - -0.6 5,612,976 - -0.1 5,612,981 + -0.7 5,613,413 - Psyr_4734 0.79 -1.1 5,613,571 + +0.5 5,613,762 + -0.6 5,613,762 + -0.5 5,613,762 + -0.4 5,613,762 + +1.1 5,613,762 + +0.7 5,613,762 + -0.2 5,613,762 + +0.5 5,613,762 + -1.7 5,613,762 + -0.4 5,613,763 - +0.8 5,613,763 - -0.3 5,613,763 - +0.5 5,613,763 - -0.1 5,613,763 - +0.4 5,613,763 - +0.4 5,613,763 - +0.9 5,613,912 - -0.2 5,613,912 - +0.4 5,614,527 + Psyr_4735 0.39 -0.5 5,614,528 - Psyr_4735 0.39 +0.6
Or see this region's nucleotide sequence