Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4702 and Psyr_4703 overlap by 4 nucleotides Psyr_4703 and Psyr_4704 are separated by 25 nucleotides Psyr_4704 and Psyr_4705 overlap by 4 nucleotides Psyr_4705 and Psyr_4706 are separated by 411 nucleotides
Psyr_4702: Psyr_4702 - Cyclic nucleotide-binding:CBS:Putative nucleotidyltransferase DUF294, at 5,572,016 to 5,573,950
_4702
Psyr_4703: Psyr_4703 - Exonuclease, at 5,573,947 to 5,574,660
_4703
Psyr_4704: Psyr_4704 - conserved hypothetical protein, at 5,574,686 to 5,574,988
_4704
Psyr_4705: Psyr_4705 - conserved hypothetical protein, at 5,574,985 to 5,575,218
_4705
Psyr_4706: Psyr_4706 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,575,630 to 5,577,255
_4706
Position (kb) 5574
5575 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5573.771 kb on + strand at 5573.771 kb on + strand at 5573.835 kb on - strand at 5573.835 kb on - strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5574.019 kb on - strand, within Psyr_4703 at 5574.846 kb on + strand, within Psyr_4704 at 5575.277 kb on - strand at 5575.321 kb on + strand at 5575.321 kb on + strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.322 kb on - strand at 5575.349 kb on - strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.504 kb on + strand at 5575.518 kb on + strand at 5575.519 kb on - strand at 5575.542 kb on + strand at 5575.542 kb on + strand at 5575.543 kb on - strand at 5575.579 kb on - strand at 5575.579 kb on - strand at 5575.590 kb on + strand at 5575.590 kb on + strand at 5575.591 kb on - strand at 5575.608 kb on + strand at 5575.608 kb on + strand at 5575.608 kb on + strand at 5575.609 kb on - strand at 5575.609 kb on - strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.629 kb on + strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.630 kb on - strand at 5575.644 kb on + strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.645 kb on - strand at 5575.838 kb on - strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.972 kb on + strand, within Psyr_4706 at 5575.973 kb on - strand, within Psyr_4706 at 5575.974 kb on + strand, within Psyr_4706 at 5575.981 kb on + strand, within Psyr_4706 at 5575.982 kb on - strand, within Psyr_4706 at 5575.982 kb on - strand, within Psyr_4706 at 5575.982 kb on - strand, within Psyr_4706
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,573,771 + -0.1 5,573,771 + +3.8 5,573,835 - -1.2 5,573,835 - -1.3 5,573,946 + -0.2 5,573,946 + -1.0 5,573,946 + -0.2 5,573,946 + +0.7 5,573,947 - +1.5 5,573,947 - +0.2 5,573,947 - -0.6 5,574,019 - Psyr_4703 0.10 -0.1 5,574,846 + Psyr_4704 0.53 -1.4 5,575,277 - +0.3 5,575,321 + -0.8 5,575,321 + +0.5 5,575,322 - -1.0 5,575,322 - -1.1 5,575,322 - -0.5 5,575,322 - -0.4 5,575,322 - -0.1 5,575,349 - +1.5 5,575,504 + +0.3 5,575,504 + +1.2 5,575,504 + +0.4 5,575,504 + +0.3 5,575,504 + -0.5 5,575,518 + +0.4 5,575,519 - -1.0 5,575,542 + -0.9 5,575,542 + -0.2 5,575,543 - -0.1 5,575,579 - -0.2 5,575,579 - +1.0 5,575,590 + -0.5 5,575,590 + +0.0 5,575,591 - -0.7 5,575,608 + +1.1 5,575,608 + -0.1 5,575,608 + +0.5 5,575,609 - +1.0 5,575,609 - -1.1 5,575,629 + +0.9 5,575,629 + -0.6 5,575,629 + -0.1 5,575,629 + +0.4 5,575,629 + -0.5 5,575,629 + +0.9 5,575,629 + -0.9 5,575,630 - +0.6 5,575,630 - -0.1 5,575,630 - -0.7 5,575,630 - +0.6 5,575,630 - +0.5 5,575,630 - +0.7 5,575,644 + -0.4 5,575,645 - -0.5 5,575,645 - -0.3 5,575,645 - +0.4 5,575,645 - +0.3 5,575,838 - Psyr_4706 0.13 -0.3 5,575,972 + Psyr_4706 0.21 -0.5 5,575,972 + Psyr_4706 0.21 +0.0 5,575,972 + Psyr_4706 0.21 -0.1 5,575,972 + Psyr_4706 0.21 +0.3 5,575,973 - Psyr_4706 0.21 -0.1 5,575,974 + Psyr_4706 0.21 +0.2 5,575,981 + Psyr_4706 0.22 -0.6 5,575,982 - Psyr_4706 0.22 -0.9 5,575,982 - Psyr_4706 0.22 -0.1 5,575,982 - Psyr_4706 0.22 -0.4
Or see this region's nucleotide sequence