Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4558

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4556 and Psyr_4557 are separated by 79 nucleotidesPsyr_4557 and Psyr_4558 are separated by 202 nucleotidesPsyr_4558 and Psyr_4559 overlap by 1 nucleotidesPsyr_4559 and Psyr_4560 are separated by 118 nucleotides Psyr_4556: Psyr_4556 - LSU ribosomal protein L12P, at 5,416,724 to 5,417,089 _4556 Psyr_4557: Psyr_4557 - LSU ribosomal protein L10P, at 5,417,169 to 5,417,669 _4557 Psyr_4558: Psyr_4558 - LSU ribosomal protein L1P, at 5,417,872 to 5,418,567 _4558 Psyr_4559: Psyr_4559 - LSU ribosomal protein L11P, at 5,418,567 to 5,418,998 _4559 Psyr_4560: Psyr_4560 - transcription antitermination protein nusG, at 5,419,117 to 5,419,650 _4560 Position (kb) 5417 5418 5419Strain fitness (log2 ratio) -1 0 1at 5419.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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5,419,056 - +0.2

Or see this region's nucleotide sequence