Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4396 and Psyr_4397 overlap by 4 nucleotides Psyr_4397 and Psyr_4398 are separated by 76 nucleotides Psyr_4398 and Psyr_4399 are separated by 129 nucleotides Psyr_4399 and Psyr_4400 are separated by 76 nucleotides
Psyr_4396: Psyr_4396 - TPR repeat protein, at 5,258,246 to 5,258,980
_4396
Psyr_4397: Psyr_4397 - conserved hypothetical protein, at 5,258,977 to 5,259,249
_4397
Psyr_4398: Psyr_4398 - Protein-disulfide reductase, at 5,259,326 to 5,261,146
_4398
Psyr_4399: Psyr_4399 - 3-dehydroquinate dehydratase, at 5,261,276 to 5,261,728
_4399
Psyr_4400: Psyr_4400 - biotin carboxyl carrier protein, at 5,261,805 to 5,262,266
_4400
Position (kb) 5259
5260
5261
5262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5258.496 kb on + strand, within Psyr_4396 at 5258.497 kb on - strand, within Psyr_4396 at 5258.525 kb on + strand, within Psyr_4396 at 5258.687 kb on + strand, within Psyr_4396 at 5258.795 kb on + strand, within Psyr_4396 at 5258.795 kb on + strand, within Psyr_4396 at 5258.796 kb on - strand, within Psyr_4396 at 5258.796 kb on - strand, within Psyr_4396 at 5258.971 kb on - strand at 5258.971 kb on - strand at 5258.990 kb on + strand at 5258.990 kb on + strand at 5258.990 kb on + strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.205 kb on + strand, within Psyr_4397 at 5259.205 kb on + strand, within Psyr_4397 at 5259.247 kb on + strand at 5259.286 kb on + strand at 5259.286 kb on + strand at 5259.286 kb on + strand at 5259.287 kb on - strand at 5259.287 kb on - strand at 5259.287 kb on - strand at 5261.752 kb on + strand at 5261.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,258,496 + Psyr_4396 0.34 -0.3 5,258,497 - Psyr_4396 0.34 -0.2 5,258,525 + Psyr_4396 0.38 +0.5 5,258,687 + Psyr_4396 0.60 -0.4 5,258,795 + Psyr_4396 0.75 -3.2 5,258,795 + Psyr_4396 0.75 -0.1 5,258,796 - Psyr_4396 0.75 +1.0 5,258,796 - Psyr_4396 0.75 +0.4 5,258,971 - +0.0 5,258,971 - +0.2 5,258,990 + -0.6 5,258,990 + +0.4 5,258,990 + -1.7 5,258,991 - -0.9 5,258,991 - +0.5 5,258,991 - +0.6 5,258,991 - -0.3 5,258,991 - -0.1 5,259,005 + Psyr_4397 0.10 +0.9 5,259,005 + Psyr_4397 0.10 +0.1 5,259,005 + Psyr_4397 0.10 +1.4 5,259,005 + Psyr_4397 0.10 -0.1 5,259,006 - Psyr_4397 0.11 +1.6 5,259,006 - Psyr_4397 0.11 +0.5 5,259,006 - Psyr_4397 0.11 -0.3 5,259,181 + Psyr_4397 0.75 +3.0 5,259,181 + Psyr_4397 0.75 -0.7 5,259,181 + Psyr_4397 0.75 -0.7 5,259,181 + Psyr_4397 0.75 +2.2 5,259,181 + Psyr_4397 0.75 -0.6 5,259,181 + Psyr_4397 0.75 -2.3 5,259,181 + Psyr_4397 0.75 +1.4 5,259,181 + Psyr_4397 0.75 -0.1 5,259,181 + Psyr_4397 0.75 +1.0 5,259,181 + Psyr_4397 0.75 -1.6 5,259,181 + Psyr_4397 0.75 -1.1 5,259,181 + Psyr_4397 0.75 +0.0 5,259,181 + Psyr_4397 0.75 -1.0 5,259,181 + Psyr_4397 0.75 -0.1 5,259,182 - Psyr_4397 0.75 -0.9 5,259,182 - Psyr_4397 0.75 -0.3 5,259,182 - Psyr_4397 0.75 -0.0 5,259,182 - +0.4 5,259,182 - Psyr_4397 0.75 +0.3 5,259,182 - Psyr_4397 0.75 -0.6 5,259,182 - Psyr_4397 0.75 -0.9 5,259,182 - Psyr_4397 0.75 +0.9 5,259,182 - Psyr_4397 0.75 -0.6 5,259,182 - Psyr_4397 0.75 +0.2 5,259,182 - Psyr_4397 0.75 +0.2 5,259,182 - Psyr_4397 0.75 +1.0 5,259,182 - Psyr_4397 0.75 -0.3 5,259,182 - Psyr_4397 0.75 -1.9 5,259,182 - Psyr_4397 0.75 -0.4 5,259,182 - Psyr_4397 0.75 -0.5 5,259,182 - Psyr_4397 0.75 -0.4 5,259,182 - Psyr_4397 0.75 -0.1 5,259,183 + Psyr_4397 0.75 -0.5 5,259,183 + Psyr_4397 0.75 -1.1 5,259,183 + Psyr_4397 0.75 -0.1 5,259,183 + Psyr_4397 0.75 +1.3 5,259,183 + Psyr_4397 0.75 -1.6 5,259,183 + Psyr_4397 0.75 -0.7 5,259,183 + Psyr_4397 0.75 -0.9 5,259,183 + Psyr_4397 0.75 +0.1 5,259,183 + Psyr_4397 0.75 -0.3 5,259,183 + Psyr_4397 0.75 -0.3 5,259,183 + Psyr_4397 0.75 +1.0 5,259,183 + Psyr_4397 0.75 -0.2 5,259,184 - Psyr_4397 0.76 +0.3 5,259,184 - Psyr_4397 0.76 +0.0 5,259,184 - Psyr_4397 0.76 -0.1 5,259,184 - Psyr_4397 0.76 +0.5 5,259,184 - Psyr_4397 0.76 +0.4 5,259,184 - Psyr_4397 0.76 -1.6 5,259,184 - Psyr_4397 0.76 -1.2 5,259,184 - Psyr_4397 0.76 -0.7 5,259,184 - Psyr_4397 0.76 -0.1 5,259,184 - Psyr_4397 0.76 +0.7 5,259,184 - Psyr_4397 0.76 -0.8 5,259,184 - Psyr_4397 0.76 -0.8 5,259,184 - Psyr_4397 0.76 +0.4 5,259,187 + Psyr_4397 0.77 -0.4 5,259,187 + Psyr_4397 0.77 -1.8 5,259,187 + Psyr_4397 0.77 -0.0 5,259,187 + Psyr_4397 0.77 -1.0 5,259,188 - Psyr_4397 0.77 -0.3 5,259,188 - Psyr_4397 0.77 +0.3 5,259,188 - Psyr_4397 0.77 +1.4 5,259,188 - Psyr_4397 0.77 -1.0 5,259,188 - Psyr_4397 0.77 -0.1 5,259,188 - Psyr_4397 0.77 +0.7 5,259,188 - Psyr_4397 0.77 -0.4 5,259,188 - Psyr_4397 0.77 +0.2 5,259,188 - Psyr_4397 0.77 -1.4 5,259,205 + Psyr_4397 0.84 -2.6 5,259,205 + Psyr_4397 0.84 -0.5 5,259,247 + -0.4 5,259,286 + -1.4 5,259,286 + -2.1 5,259,286 + +1.5 5,259,287 - -1.3 5,259,287 - -0.6 5,259,287 - -0.5 5,261,752 + +1.9 5,261,782 + -0.7
Or see this region's nucleotide sequence