Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4261 and Psyr_4262 are separated by 133 nucleotides Psyr_4262 and Psyr_4263 are separated by 74 nucleotides Psyr_4263 and Psyr_4264 are separated by 60 nucleotides
Psyr_4261: Psyr_4261 - conserved hypothetical protein, at 5,078,443 to 5,080,296
_4261
Psyr_4262: Psyr_4262 - lipoprotein, putative, at 5,080,430 to 5,080,783
_4262
Psyr_4263: Psyr_4263 - transcription elongation factor GreB, at 5,080,858 to 5,081,355
_4263
Psyr_4264: Psyr_4264 - ABC transporter, at 5,081,416 to 5,083,080
_4264
Position (kb) 5080
5081 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5079.454 kb on + strand, within Psyr_4261 at 5079.654 kb on + strand, within Psyr_4261 at 5079.654 kb on + strand, within Psyr_4261 at 5079.654 kb on + strand, within Psyr_4261 at 5079.655 kb on - strand, within Psyr_4261 at 5079.655 kb on - strand, within Psyr_4261 at 5079.655 kb on - strand, within Psyr_4261 at 5079.655 kb on - strand, within Psyr_4261 at 5079.655 kb on - strand, within Psyr_4261 at 5079.703 kb on + strand, within Psyr_4261 at 5079.722 kb on - strand, within Psyr_4261 at 5079.722 kb on - strand, within Psyr_4261 at 5079.722 kb on - strand, within Psyr_4261 at 5079.746 kb on - strand, within Psyr_4261 at 5079.799 kb on + strand, within Psyr_4261 at 5079.799 kb on + strand, within Psyr_4261 at 5080.078 kb on - strand, within Psyr_4261 at 5080.078 kb on - strand, within Psyr_4261 at 5080.138 kb on + strand at 5080.139 kb on - strand at 5080.292 kb on - strand at 5080.363 kb on + strand at 5080.363 kb on + strand at 5080.363 kb on + strand at 5080.363 kb on + strand at 5080.364 kb on - strand at 5080.364 kb on - strand at 5080.364 kb on - strand at 5080.374 kb on + strand at 5080.380 kb on + strand at 5080.392 kb on + strand at 5080.392 kb on + strand at 5080.392 kb on + strand at 5080.392 kb on + strand at 5080.393 kb on - strand at 5080.399 kb on + strand at 5080.399 kb on + strand at 5080.399 kb on + strand at 5080.399 kb on + strand at 5080.399 kb on + strand at 5080.400 kb on - strand at 5080.400 kb on - strand at 5080.400 kb on - strand at 5080.400 kb on - strand at 5080.412 kb on + strand at 5080.413 kb on - strand at 5080.413 kb on - strand at 5080.413 kb on - strand at 5080.413 kb on - strand at 5080.613 kb on + strand, within Psyr_4262 at 5080.632 kb on - strand, within Psyr_4262 at 5080.840 kb on + strand at 5080.840 kb on + strand at 5080.840 kb on + strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.843 kb on + strand at 5080.844 kb on - strand at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.008 kb on - strand, within Psyr_4263 at 5081.074 kb on + strand, within Psyr_4263 at 5081.074 kb on + strand, within Psyr_4263 at 5081.075 kb on - strand, within Psyr_4263 at 5081.492 kb on + strand at 5081.493 kb on - strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,079,454 + Psyr_4261 0.55 -1.0 5,079,654 + Psyr_4261 0.65 -0.1 5,079,654 + Psyr_4261 0.65 -0.1 5,079,654 + Psyr_4261 0.65 -0.0 5,079,655 - Psyr_4261 0.65 +0.4 5,079,655 - Psyr_4261 0.65 +0.5 5,079,655 - Psyr_4261 0.65 +0.3 5,079,655 - Psyr_4261 0.65 -1.1 5,079,655 - Psyr_4261 0.65 -0.7 5,079,703 + Psyr_4261 0.68 -0.4 5,079,722 - Psyr_4261 0.69 +1.5 5,079,722 - Psyr_4261 0.69 -0.7 5,079,722 - Psyr_4261 0.69 +0.7 5,079,746 - Psyr_4261 0.70 -0.3 5,079,799 + Psyr_4261 0.73 -0.9 5,079,799 + Psyr_4261 0.73 +0.1 5,080,078 - Psyr_4261 0.88 -0.2 5,080,078 - Psyr_4261 0.88 -0.1 5,080,138 + +0.7 5,080,139 - +0.5 5,080,292 - -1.7 5,080,363 + -2.4 5,080,363 + -0.1 5,080,363 + -0.8 5,080,363 + +0.9 5,080,364 - +0.4 5,080,364 - +0.5 5,080,364 - -0.3 5,080,374 + +0.2 5,080,380 + -1.7 5,080,392 + -0.3 5,080,392 + -0.7 5,080,392 + -0.6 5,080,392 + -0.9 5,080,393 - +1.2 5,080,399 + +0.6 5,080,399 + -0.9 5,080,399 + -0.5 5,080,399 + -0.0 5,080,399 + -0.5 5,080,400 - +0.8 5,080,400 - +0.0 5,080,400 - +1.3 5,080,400 - -0.4 5,080,412 + +0.1 5,080,413 - +0.6 5,080,413 - +0.4 5,080,413 - +0.1 5,080,413 - -0.2 5,080,613 + Psyr_4262 0.52 -2.9 5,080,632 - Psyr_4262 0.57 -0.6 5,080,840 + -0.5 5,080,840 + +0.1 5,080,840 + -1.3 5,080,841 - +0.5 5,080,841 - -0.0 5,080,841 - -1.3 5,080,841 - -0.9 5,080,841 - +0.4 5,080,843 + +1.5 5,080,844 - -0.5 5,080,942 + Psyr_4263 0.17 +0.4 5,080,942 + Psyr_4263 0.17 +0.3 5,080,942 + Psyr_4263 0.17 +0.1 5,080,942 + Psyr_4263 0.17 +0.0 5,080,942 + Psyr_4263 0.17 +1.5 5,080,942 + Psyr_4263 0.17 +1.7 5,080,942 + Psyr_4263 0.17 -1.5 5,080,942 + Psyr_4263 0.17 -0.1 5,080,942 + Psyr_4263 0.17 -0.2 5,080,943 - Psyr_4263 0.17 -0.0 5,080,943 - Psyr_4263 0.17 +1.3 5,080,943 - Psyr_4263 0.17 +0.4 5,080,943 - Psyr_4263 0.17 +0.1 5,080,943 - Psyr_4263 0.17 +0.1 5,080,943 - Psyr_4263 0.17 +1.1 5,080,943 - Psyr_4263 0.17 +0.9 5,080,943 - Psyr_4263 0.17 -0.2 5,080,943 - Psyr_4263 0.17 +0.0 5,081,007 + Psyr_4263 0.30 -1.5 5,081,007 + Psyr_4263 0.30 +0.1 5,081,007 + Psyr_4263 0.30 +0.5 5,081,007 + Psyr_4263 0.30 +0.5 5,081,008 - Psyr_4263 0.30 +0.2 5,081,074 + Psyr_4263 0.43 -0.1 5,081,074 + Psyr_4263 0.43 -0.1 5,081,075 - Psyr_4263 0.44 +0.7 5,081,492 + +0.5 5,081,493 - -0.2 5,081,502 - +0.3 5,081,502 - +0.2 5,081,502 - +0.6 5,081,502 - -0.3 5,081,561 - -0.1
Or see this region's nucleotide sequence