Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4259 and Psyr_4260 are separated by 276 nucleotides Psyr_4260 and Psyr_4261 are separated by 62 nucleotides
Psyr_4259: Psyr_4259 - ATP-dependent protease, putative, at 5,075,180 to 5,077,615
_4259
Psyr_4260: Psyr_4260 - conserved hypothetical protein, at 5,077,892 to 5,078,380
_4260
Psyr_4261: Psyr_4261 - conserved hypothetical protein, at 5,078,443 to 5,080,296
_4261
Position (kb) 5077
5078
5079 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5076.979 kb on + strand, within Psyr_4259 at 5076.979 kb on + strand, within Psyr_4259 at 5076.979 kb on + strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5076.980 kb on - strand, within Psyr_4259 at 5077.089 kb on + strand, within Psyr_4259 at 5077.090 kb on - strand, within Psyr_4259 at 5077.147 kb on - strand, within Psyr_4259 at 5077.192 kb on - strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.276 kb on + strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.332 kb on + strand, within Psyr_4259 at 5077.333 kb on - strand, within Psyr_4259 at 5077.333 kb on - strand, within Psyr_4259 at 5077.438 kb on - strand at 5077.438 kb on - strand at 5077.479 kb on - strand at 5077.589 kb on + strand at 5077.590 kb on - strand at 5077.590 kb on - strand at 5077.619 kb on + strand at 5077.619 kb on + strand at 5077.620 kb on - strand at 5077.626 kb on + strand at 5077.626 kb on + strand at 5077.626 kb on + strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.627 kb on - strand at 5077.667 kb on + strand at 5077.756 kb on + strand at 5077.757 kb on - strand at 5077.757 kb on - strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.842 kb on + strand at 5077.875 kb on + strand at 5077.876 kb on - strand at 5077.891 kb on + strand at 5077.942 kb on + strand, within Psyr_4260 at 5077.942 kb on + strand, within Psyr_4260 at 5078.044 kb on + strand, within Psyr_4260 at 5078.045 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.115 kb on - strand, within Psyr_4260 at 5078.122 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.204 kb on + strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.205 kb on - strand, within Psyr_4260 at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.363 kb on + strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.364 kb on - strand at 5078.378 kb on + strand at 5078.379 kb on - strand at 5078.379 kb on - strand at 5078.431 kb on + strand at 5078.432 kb on - strand at 5078.442 kb on + strand at 5078.442 kb on + strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.443 kb on - strand at 5078.599 kb on + strand at 5078.599 kb on + strand at 5078.599 kb on + strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.600 kb on - strand at 5078.683 kb on + strand, within Psyr_4261 at 5078.723 kb on + strand, within Psyr_4261 at 5078.723 kb on + strand, within Psyr_4261 at 5078.724 kb on - strand, within Psyr_4261 at 5078.724 kb on - strand, within Psyr_4261 at 5078.737 kb on - strand, within Psyr_4261 at 5078.810 kb on - strand, within Psyr_4261 at 5078.947 kb on + strand, within Psyr_4261 at 5078.948 kb on - strand, within Psyr_4261 at 5078.968 kb on + strand, within Psyr_4261 at 5078.968 kb on + strand, within Psyr_4261 at 5078.969 kb on - strand, within Psyr_4261 at 5078.969 kb on - strand, within Psyr_4261 at 5079.184 kb on + strand, within Psyr_4261 at 5079.184 kb on + strand, within Psyr_4261 at 5079.185 kb on - strand, within Psyr_4261 at 5079.185 kb on - strand, within Psyr_4261 at 5079.185 kb on - strand, within Psyr_4261 at 5079.335 kb on + strand, within Psyr_4261 at 5079.335 kb on + strand, within Psyr_4261 at 5079.335 kb on + strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261 at 5079.336 kb on - strand, within Psyr_4261
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 5,076,979 + Psyr_4259 0.74 -0.1 5,076,979 + Psyr_4259 0.74 +0.6 5,076,979 + Psyr_4259 0.74 +0.1 5,076,980 - Psyr_4259 0.74 +2.2 5,076,980 - Psyr_4259 0.74 -1.1 5,076,980 - Psyr_4259 0.74 +0.1 5,077,089 + Psyr_4259 0.78 -1.1 5,077,090 - Psyr_4259 0.78 +0.3 5,077,147 - Psyr_4259 0.81 +0.8 5,077,192 - Psyr_4259 0.83 -0.4 5,077,276 + Psyr_4259 0.86 +0.5 5,077,276 + Psyr_4259 0.86 +0.2 5,077,276 + Psyr_4259 0.86 +0.1 5,077,276 + Psyr_4259 0.86 +0.5 5,077,332 + Psyr_4259 0.88 -0.3 5,077,332 + Psyr_4259 0.88 -0.5 5,077,333 - Psyr_4259 0.88 -0.7 5,077,333 - Psyr_4259 0.88 -0.5 5,077,438 - +0.5 5,077,438 - -0.4 5,077,479 - -0.6 5,077,589 + +0.1 5,077,590 - +0.2 5,077,590 - -0.3 5,077,619 + +0.7 5,077,619 + -0.6 5,077,620 - +1.2 5,077,626 + +0.3 5,077,626 + -0.6 5,077,626 + -0.3 5,077,627 - -0.3 5,077,627 - +1.3 5,077,627 - +0.9 5,077,627 - +0.5 5,077,627 - +0.6 5,077,627 - -0.5 5,077,667 + -1.7 5,077,756 + -2.0 5,077,757 - +0.1 5,077,757 - +0.2 5,077,842 + -0.8 5,077,842 + -0.2 5,077,842 + +0.4 5,077,875 + +0.3 5,077,876 - +1.7 5,077,891 + +0.2 5,077,942 + Psyr_4260 0.10 +0.5 5,077,942 + Psyr_4260 0.10 +0.2 5,078,044 + Psyr_4260 0.31 -0.4 5,078,045 - Psyr_4260 0.31 +0.5 5,078,115 - Psyr_4260 0.46 +1.8 5,078,115 - Psyr_4260 0.46 +0.3 5,078,115 - Psyr_4260 0.46 +1.0 5,078,115 - Psyr_4260 0.46 -2.0 5,078,122 + Psyr_4260 0.47 -0.0 5,078,204 + Psyr_4260 0.64 +0.2 5,078,204 + Psyr_4260 0.64 +1.0 5,078,204 + Psyr_4260 0.64 +0.6 5,078,204 + Psyr_4260 0.64 +0.1 5,078,204 + Psyr_4260 0.64 +0.1 5,078,204 + Psyr_4260 0.64 -0.1 5,078,204 + Psyr_4260 0.64 -0.5 5,078,204 + Psyr_4260 0.64 +0.1 5,078,205 - Psyr_4260 0.64 -0.3 5,078,205 - Psyr_4260 0.64 -1.1 5,078,205 - Psyr_4260 0.64 -1.3 5,078,205 - Psyr_4260 0.64 +0.8 5,078,205 - Psyr_4260 0.64 -0.2 5,078,205 - Psyr_4260 0.64 -1.3 5,078,363 + +0.0 5,078,363 + -1.3 5,078,363 + -1.1 5,078,363 + -0.2 5,078,363 + +0.2 5,078,363 + +0.3 5,078,363 + -0.1 5,078,364 - +0.2 5,078,364 - -0.5 5,078,364 - -0.3 5,078,364 - +0.6 5,078,364 - +1.7 5,078,364 - -1.0 5,078,378 + -1.3 5,078,379 - -0.5 5,078,379 - +0.4 5,078,431 + -2.4 5,078,432 - -1.1 5,078,442 + +1.6 5,078,442 + -1.1 5,078,443 - +2.7 5,078,443 - +0.2 5,078,443 - -0.6 5,078,443 - +0.9 5,078,443 - -0.5 5,078,599 + +0.9 5,078,599 + -0.8 5,078,599 + -0.5 5,078,600 - -1.5 5,078,600 - -0.5 5,078,600 - -0.3 5,078,600 - +0.1 5,078,683 + Psyr_4261 0.13 -0.3 5,078,723 + Psyr_4261 0.15 +0.8 5,078,723 + Psyr_4261 0.15 -0.3 5,078,724 - Psyr_4261 0.15 -1.3 5,078,724 - Psyr_4261 0.15 -0.7 5,078,737 - Psyr_4261 0.16 +0.2 5,078,810 - Psyr_4261 0.20 +0.2 5,078,947 + Psyr_4261 0.27 -0.1 5,078,948 - Psyr_4261 0.27 -0.2 5,078,968 + Psyr_4261 0.28 +0.2 5,078,968 + Psyr_4261 0.28 -0.7 5,078,969 - Psyr_4261 0.28 +0.2 5,078,969 - Psyr_4261 0.28 +0.2 5,079,184 + Psyr_4261 0.40 +0.3 5,079,184 + Psyr_4261 0.40 +0.6 5,079,185 - Psyr_4261 0.40 -1.2 5,079,185 - Psyr_4261 0.40 -0.0 5,079,185 - Psyr_4261 0.40 -0.3 5,079,335 + Psyr_4261 0.48 +0.5 5,079,335 + Psyr_4261 0.48 -0.5 5,079,335 + Psyr_4261 0.48 -0.5 5,079,336 - Psyr_4261 0.48 -0.2 5,079,336 - Psyr_4261 0.48 -0.4 5,079,336 - Psyr_4261 0.48 +0.9 5,079,336 - Psyr_4261 0.48 +1.0 5,079,336 - Psyr_4261 0.48 +0.6 5,079,336 - Psyr_4261 0.48 +0.9 5,079,336 - Psyr_4261 0.48 -0.5 5,079,336 - Psyr_4261 0.48 +0.7 5,079,336 - Psyr_4261 0.48 +1.0 5,079,336 - Psyr_4261 0.48 +0.4 5,079,336 - Psyr_4261 0.48 -0.5
Or see this region's nucleotide sequence