Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4123

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4122 and Psyr_4123 are separated by 62 nucleotidesPsyr_4123 and Psyr_4124 are separated by 39 nucleotidesPsyr_4124 and Psyr_4125 are separated by 139 nucleotides Psyr_4122: Psyr_4122 - AFG1-like ATPase, at 4,911,019 to 4,912,113 _4122 Psyr_4123: Psyr_4123 - tryptophanyl-tRNA synthetase, at 4,912,176 to 4,913,525 _4123 Psyr_4124: Psyr_4124 - conserved hypothetical protein, at 4,913,565 to 4,914,200 _4124 Psyr_4125: Psyr_4125 - Protein of unknown function DUF1043, at 4,914,340 to 4,914,783 _4125 Position (kb) 4912 4913 4914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4911.282 kb on - strand, within Psyr_4122at 4911.282 kb on - strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.605 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.893 kb on + strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.894 kb on - strand, within Psyr_4122at 4911.910 kb on + strand, within Psyr_4122at 4911.910 kb on + strand, within Psyr_4122at 4911.911 kb on - strand, within Psyr_4122at 4911.911 kb on - strand, within Psyr_4122at 4911.926 kb on + strand, within Psyr_4122at 4911.927 kb on - strand, within Psyr_4122at 4912.017 kb on - strandat 4912.094 kb on + strandat 4912.102 kb on + strandat 4912.103 kb on - strandat 4912.113 kb on + strandat 4913.544 kb on - strandat 4913.544 kb on - strandat 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.687 kb on - strand, within Psyr_4124at 4913.972 kb on + strand, within Psyr_4124at 4913.998 kb on + strand, within Psyr_4124at 4914.062 kb on + strand, within Psyr_4124at 4914.063 kb on - strand, within Psyr_4124at 4914.092 kb on + strand, within Psyr_4124at 4914.140 kb on - strandat 4914.173 kb on + strandat 4914.177 kb on + strandat 4914.177 kb on + strandat 4914.177 kb on + strandat 4914.177 kb on + strandat 4914.178 kb on - strandat 4914.178 kb on - strandat 4914.178 kb on - strandat 4914.178 kb on - strandat 4914.178 kb on - strandat 4914.239 kb on - strandat 4914.261 kb on + strandat 4914.261 kb on + strandat 4914.262 kb on - strandat 4914.270 kb on + strandat 4914.270 kb on + strandat 4914.271 kb on - strandat 4914.271 kb on - strandat 4914.283 kb on + strandat 4914.283 kb on + strandat 4914.283 kb on + strandat 4914.283 kb on + strandat 4914.283 kb on + strandat 4914.283 kb on + strandat 4914.284 kb on - strandat 4914.284 kb on - strandat 4914.284 kb on - strandat 4914.284 kb on - strandat 4914.284 kb on - strandat 4914.284 kb on - strandat 4914.284 kb on - strandat 4914.309 kb on + strandat 4914.310 kb on - strandat 4914.310 kb on - strandat 4914.326 kb on + strandat 4914.326 kb on + strandat 4914.327 kb on - strandat 4914.327 kb on - strandat 4914.356 kb on + strandat 4914.356 kb on + strandat 4914.356 kb on + strandat 4914.356 kb on + strandat 4914.356 kb on + strandat 4914.356 kb on + strandat 4914.357 kb on - strandat 4914.503 kb on + strand, within Psyr_4125at 4914.503 kb on + strand, within Psyr_4125at 4914.503 kb on + strand, within Psyr_4125at 4914.503 kb on + strand, within Psyr_4125

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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4,911,282 - Psyr_4122 0.24 -0.3
4,911,282 - Psyr_4122 0.24 -0.3
4,911,605 + Psyr_4122 0.54 +0.8
4,911,605 + Psyr_4122 0.54 -0.0
4,911,605 + Psyr_4122 0.54 -1.2
4,911,605 + Psyr_4122 0.54 -0.1
4,911,893 + Psyr_4122 0.80 -0.4
4,911,893 + Psyr_4122 0.80 -2.1
4,911,893 + Psyr_4122 0.80 +0.8
4,911,893 + Psyr_4122 0.80 +0.5
4,911,894 - Psyr_4122 0.80 -0.5
4,911,894 - Psyr_4122 0.80 -1.7
4,911,894 - Psyr_4122 0.80 -0.5
4,911,894 - Psyr_4122 0.80 +0.6
4,911,910 + Psyr_4122 0.81 +0.3
4,911,910 + Psyr_4122 0.81 -0.3
4,911,911 - Psyr_4122 0.81 +0.1
4,911,911 - Psyr_4122 0.81 +1.3
4,911,926 + Psyr_4122 0.83 +0.1
4,911,927 - Psyr_4122 0.83 +0.9
4,912,017 - -0.9
4,912,094 + +0.8
4,912,102 + -0.1
4,912,103 - -0.7
4,912,113 + -0.9
4,913,544 - +0.1
4,913,544 - +0.2
4,913,687 - Psyr_4124 0.19 +0.6
4,913,687 - Psyr_4124 0.19 +0.4
4,913,687 - Psyr_4124 0.19 +0.1
4,913,687 - Psyr_4124 0.19 +0.6
4,913,687 - Psyr_4124 0.19 -2.0
4,913,687 - Psyr_4124 0.19 -0.3
4,913,687 - Psyr_4124 0.19 +0.8
4,913,687 - Psyr_4124 0.19 -0.6
4,913,687 - Psyr_4124 0.19 +1.8
4,913,687 - Psyr_4124 0.19 -0.4
4,913,687 - Psyr_4124 0.19 +0.8
4,913,687 - Psyr_4124 0.19 -0.3
4,913,687 - Psyr_4124 0.19 -1.7
4,913,687 - Psyr_4124 0.19 -1.9
4,913,972 + Psyr_4124 0.64 -0.2
4,913,998 + Psyr_4124 0.68 -0.3
4,914,062 + Psyr_4124 0.78 +1.8
4,914,063 - Psyr_4124 0.78 +1.0
4,914,092 + Psyr_4124 0.83 -1.0
4,914,140 - +0.1
4,914,173 + -0.4
4,914,177 + -0.1
4,914,177 + -0.3
4,914,177 + -0.4
4,914,177 + +0.9
4,914,178 - +0.4
4,914,178 - +0.4
4,914,178 - -1.0
4,914,178 - -0.4
4,914,178 - +0.3
4,914,239 - -1.2
4,914,261 + -1.4
4,914,261 + +0.9
4,914,262 - +0.6
4,914,270 + -0.1
4,914,270 + +0.2
4,914,271 - -0.7
4,914,271 - +0.4
4,914,283 + -0.1
4,914,283 + +0.2
4,914,283 + +0.4
4,914,283 + -0.0
4,914,283 + +0.2
4,914,283 + -0.0
4,914,284 - -1.0
4,914,284 - +0.6
4,914,284 - +1.0
4,914,284 - -0.6
4,914,284 - -0.3
4,914,284 - -0.3
4,914,284 - +0.4
4,914,309 + +0.3
4,914,310 - -0.6
4,914,310 - +1.1
4,914,326 + -0.1
4,914,326 + +0.4
4,914,327 - -0.8
4,914,327 - +0.7
4,914,356 + +0.0
4,914,356 + +0.1
4,914,356 + -0.6
4,914,356 + +0.2
4,914,356 + +0.9
4,914,356 + -0.2
4,914,357 - -3.5
4,914,503 + Psyr_4125 0.37 -0.6
4,914,503 + Psyr_4125 0.37 -0.8
4,914,503 + Psyr_4125 0.37 -0.4
4,914,503 + Psyr_4125 0.37 +0.1

Or see this region's nucleotide sequence