Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4109 and Psyr_4110 overlap by 4 nucleotides Psyr_4110 and Psyr_4111 are separated by 2 nucleotides Psyr_4111 and Psyr_4112 are separated by 750 nucleotides
Psyr_4109: Psyr_4109 - Cell division protein FtsL, at 4,900,188 to 4,900,481
_4109
Psyr_4110: Psyr_4110 - methyltransferase, at 4,900,478 to 4,901,419
_4110
Psyr_4111: Psyr_4111 - Protein of unknown function UPF0040, at 4,901,422 to 4,901,877
_4111
Psyr_4112: Psyr_4112 - Protein of unknown function UPF0011, at 4,902,628 to 4,903,542
_4112
Position (kb) 4901
4902 Strain fitness (log2 ratio) -2
-1
0
1 at 4901.441 kb on - strand at 4901.441 kb on - strand at 4901.641 kb on - strand, within Psyr_4111 at 4901.895 kb on - strand at 4901.956 kb on - strand at 4901.956 kb on - strand at 4902.586 kb on - strand at 4902.586 kb on - strand at 4902.588 kb on + strand at 4902.588 kb on + strand at 4902.588 kb on + strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.629 kb on + strand at 4902.629 kb on + strand at 4902.629 kb on + strand at 4902.630 kb on - strand at 4902.660 kb on - strand at 4902.685 kb on + strand at 4902.686 kb on - strand at 4902.834 kb on + strand, within Psyr_4112 at 4902.834 kb on + strand, within Psyr_4112 at 4902.835 kb on - strand, within Psyr_4112 at 4902.835 kb on - strand, within Psyr_4112 at 4902.868 kb on + strand, within Psyr_4112 at 4902.868 kb on + strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 4,901,441 - -0.1 4,901,441 - +0.8 4,901,641 - Psyr_4111 0.48 +0.9 4,901,895 - +0.2 4,901,956 - -1.3 4,901,956 - -0.3 4,902,586 - -0.9 4,902,586 - -0.1 4,902,588 + +0.4 4,902,588 + -0.8 4,902,588 + -0.6 4,902,589 - -0.0 4,902,589 - -0.1 4,902,589 - -0.3 4,902,589 - +0.8 4,902,589 - -0.3 4,902,629 + -2.5 4,902,629 + -0.4 4,902,629 + -2.0 4,902,630 - +0.1 4,902,660 - -1.3 4,902,685 + -2.1 4,902,686 - -1.1 4,902,834 + Psyr_4112 0.23 -0.1 4,902,834 + Psyr_4112 0.23 -0.6 4,902,835 - Psyr_4112 0.23 +0.1 4,902,835 - Psyr_4112 0.23 +0.2 4,902,868 + Psyr_4112 0.26 +1.4 4,902,868 + Psyr_4112 0.26 +1.4 4,902,869 - Psyr_4112 0.26 -0.4 4,902,869 - Psyr_4112 0.26 -1.8 4,902,869 - Psyr_4112 0.26 -1.4 4,902,869 - Psyr_4112 0.26 -2.1
Or see this region's nucleotide sequence