Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4070 and Psyr_4071 are separated by 177 nucleotides Psyr_4071 and Psyr_4072 are separated by 81 nucleotides Psyr_4072 and Psyr_4073 are separated by 49 nucleotides Psyr_4073 and Psyr_4074 are separated by 255 nucleotides
Psyr_4070: Psyr_4070 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,853,843 to 4,854,526
_4070
Psyr_4071: Psyr_4071 - Phosphoesterase, PA-phosphatase related protein, at 4,854,704 to 4,855,444
_4071
Psyr_4072: Psyr_4072 - Chaperonin Cpn60/TCP-1, at 4,855,526 to 4,857,169
_4072
Psyr_4073: Psyr_4073 - Chaperonin Cpn10, at 4,857,219 to 4,857,512
_4073
Psyr_4074: Psyr_4074 - FxsA cytoplasmic membrane protein, at 4,857,768 to 4,858,262
_4074
Position (kb) 4855
4856
4857
4858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4854.539 kb on + strand at 4854.539 kb on + strand at 4854.540 kb on - strand at 4854.540 kb on - strand at 4854.563 kb on + strand at 4854.563 kb on + strand at 4854.564 kb on - strand at 4854.564 kb on - strand at 4854.564 kb on - strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.619 kb on - strand at 4854.619 kb on - strand at 4854.619 kb on - strand at 4854.628 kb on - strand at 4854.628 kb on - strand at 4854.669 kb on - strand at 4854.669 kb on - strand at 4854.729 kb on - strand at 4854.755 kb on + strand at 4854.878 kb on + strand, within Psyr_4071 at 4854.878 kb on + strand, within Psyr_4071 at 4854.879 kb on - strand, within Psyr_4071 at 4854.879 kb on - strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.972 kb on + strand, within Psyr_4071 at 4854.973 kb on - strand, within Psyr_4071 at 4855.115 kb on + strand, within Psyr_4071 at 4855.115 kb on + strand, within Psyr_4071 at 4855.116 kb on - strand, within Psyr_4071 at 4855.195 kb on + strand, within Psyr_4071 at 4855.330 kb on + strand, within Psyr_4071 at 4855.376 kb on + strand at 4855.377 kb on - strand at 4855.379 kb on + strand at 4855.379 kb on + strand at 4855.379 kb on + strand at 4855.379 kb on + strand at 4855.379 kb on + strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.380 kb on - strand at 4855.428 kb on + strand at 4855.428 kb on + strand at 4855.428 kb on + strand at 4855.429 kb on - strand at 4855.429 kb on - strand at 4855.468 kb on - strand at 4855.505 kb on - strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.527 kb on + strand at 4855.528 kb on - strand at 4855.528 kb on - strand at 4855.528 kb on - strand at 4855.528 kb on - strand at 4855.528 kb on - strand at 4855.528 kb on - strand at 4857.192 kb on - strand at 4857.653 kb on - strand at 4857.653 kb on - strand at 4857.653 kb on - strand at 4857.653 kb on - strand at 4857.653 kb on - strand at 4857.653 kb on - strand at 4857.657 kb on - strand at 4857.657 kb on - strand at 4857.657 kb on - strand at 4857.657 kb on - strand at 4857.657 kb on - strand at 4857.676 kb on - strand at 4857.676 kb on - strand at 4857.769 kb on + strand at 4857.769 kb on + strand at 4857.769 kb on + strand at 4857.770 kb on - strand at 4857.770 kb on - strand at 4857.770 kb on - strand at 4857.770 kb on - strand at 4857.770 kb on - strand at 4857.770 kb on - strand at 4857.818 kb on + strand, within Psyr_4074
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 4,854,539 + -0.4 4,854,539 + +0.9 4,854,540 - +0.7 4,854,540 - -0.6 4,854,563 + -0.7 4,854,563 + +1.1 4,854,564 - +0.4 4,854,564 - +0.5 4,854,564 - -0.0 4,854,618 + +0.4 4,854,618 + -1.7 4,854,618 + -0.0 4,854,618 + +1.7 4,854,618 + -0.1 4,854,619 - +0.7 4,854,619 - +0.4 4,854,619 - -0.0 4,854,628 - -0.3 4,854,628 - +0.2 4,854,669 - -0.6 4,854,669 - -1.2 4,854,729 - +0.7 4,854,755 + -0.1 4,854,878 + Psyr_4071 0.23 +0.5 4,854,878 + Psyr_4071 0.23 +0.2 4,854,879 - Psyr_4071 0.24 +0.2 4,854,879 - Psyr_4071 0.24 +0.7 4,854,972 + Psyr_4071 0.36 +0.9 4,854,972 + Psyr_4071 0.36 -0.3 4,854,972 + Psyr_4071 0.36 +1.0 4,854,972 + Psyr_4071 0.36 -0.1 4,854,972 + Psyr_4071 0.36 -0.3 4,854,972 + Psyr_4071 0.36 -0.2 4,854,972 + Psyr_4071 0.36 +0.9 4,854,973 - Psyr_4071 0.36 -0.1 4,855,115 + Psyr_4071 0.55 -1.0 4,855,115 + Psyr_4071 0.55 +0.1 4,855,116 - Psyr_4071 0.56 +0.0 4,855,195 + Psyr_4071 0.66 -0.1 4,855,330 + Psyr_4071 0.84 +0.0 4,855,376 + +0.8 4,855,377 - -0.1 4,855,379 + +0.6 4,855,379 + +0.5 4,855,379 + -0.3 4,855,379 + +0.3 4,855,379 + +0.7 4,855,380 - -0.9 4,855,380 - -1.6 4,855,380 - +0.3 4,855,380 - +0.0 4,855,380 - +0.1 4,855,380 - -0.9 4,855,380 - +3.4 4,855,380 - -1.0 4,855,380 - +0.7 4,855,380 - -0.1 4,855,428 + -0.0 4,855,428 + +0.6 4,855,428 + -0.0 4,855,429 - +1.0 4,855,429 - -0.1 4,855,468 - +0.1 4,855,505 - +0.1 4,855,527 + -3.1 4,855,527 + -0.6 4,855,527 + +1.4 4,855,527 + +1.4 4,855,527 + +1.4 4,855,527 + +1.4 4,855,527 + -1.9 4,855,527 + +1.4 4,855,527 + -1.4 4,855,527 + +1.4 4,855,527 + -1.1 4,855,527 + +1.4 4,855,528 - -2.1 4,855,528 - -0.3 4,855,528 - +1.0 4,855,528 - +0.2 4,855,528 - -0.3 4,855,528 - -0.9 4,857,192 - -0.6 4,857,653 - +0.2 4,857,653 - +0.7 4,857,653 - +1.6 4,857,653 - +0.6 4,857,653 - -0.4 4,857,653 - +0.4 4,857,657 - +0.3 4,857,657 - +1.7 4,857,657 - +0.3 4,857,657 - -0.5 4,857,657 - +0.1 4,857,676 - +0.6 4,857,676 - +0.6 4,857,769 + -0.1 4,857,769 + -0.7 4,857,769 + -0.1 4,857,770 - -0.2 4,857,770 - +1.2 4,857,770 - +1.4 4,857,770 - -0.0 4,857,770 - +0.4 4,857,770 - +0.2 4,857,818 + Psyr_4074 0.10 +0.0
Or see this region's nucleotide sequence