Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3799

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3797 and Psyr_3798 are separated by 117 nucleotidesPsyr_3798 and Psyr_3799 are separated by 57 nucleotidesPsyr_3799 and Psyr_3800 overlap by 4 nucleotides Psyr_3797: Psyr_3797 - NAD(P)H dehydrogenase (quinone), at 4,514,362 to 4,515,162 _3797 Psyr_3798: Psyr_3798 - conserved domain protein, at 4,515,280 to 4,515,795 _3798 Psyr_3799: Psyr_3799 - conserved hypothetical protein, at 4,515,853 to 4,516,881 _3799 Psyr_3800: Psyr_3800 - Major facilitator superfamily, at 4,516,878 to 4,518,140 _3800 Position (kb) 4515 4516 4517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4514.909 kb on - strand, within Psyr_3797at 4515.064 kb on + strand, within Psyr_3797at 4515.161 kb on - strandat 4515.207 kb on + strandat 4515.284 kb on + strandat 4515.285 kb on - strandat 4515.317 kb on + strandat 4515.318 kb on - strandat 4515.388 kb on + strand, within Psyr_3798at 4515.388 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.457 kb on + strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.458 kb on - strand, within Psyr_3798at 4515.573 kb on - strand, within Psyr_3798at 4515.646 kb on + strand, within Psyr_3798at 4515.646 kb on + strand, within Psyr_3798at 4515.647 kb on - strand, within Psyr_3798at 4515.647 kb on - strand, within Psyr_3798at 4515.650 kb on - strand, within Psyr_3798at 4515.682 kb on - strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.694 kb on + strand, within Psyr_3798at 4515.695 kb on - strand, within Psyr_3798at 4515.736 kb on - strand, within Psyr_3798at 4515.765 kb on - strandat 4515.854 kb on + strandat 4515.855 kb on - strandat 4515.980 kb on + strand, within Psyr_3799at 4515.981 kb on - strand, within Psyr_3799at 4516.178 kb on + strand, within Psyr_3799at 4516.222 kb on + strand, within Psyr_3799at 4516.238 kb on + strand, within Psyr_3799at 4516.238 kb on + strand, within Psyr_3799at 4516.238 kb on + strand, within Psyr_3799at 4516.239 kb on - strand, within Psyr_3799at 4516.246 kb on - strand, within Psyr_3799at 4516.259 kb on + strand, within Psyr_3799at 4516.260 kb on - strand, within Psyr_3799at 4516.260 kb on - strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.361 kb on + strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.362 kb on - strand, within Psyr_3799at 4516.542 kb on + strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.543 kb on - strand, within Psyr_3799at 4516.625 kb on + strand, within Psyr_3799at 4516.626 kb on - strand, within Psyr_3799at 4516.626 kb on - strand, within Psyr_3799at 4516.690 kb on - strand, within Psyr_3799at 4516.690 kb on - strand, within Psyr_3799at 4516.714 kb on + strand, within Psyr_3799at 4516.716 kb on + strand, within Psyr_3799at 4516.716 kb on + strand, within Psyr_3799at 4516.717 kb on - strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.745 kb on + strand, within Psyr_3799at 4516.746 kb on - strand, within Psyr_3799at 4516.793 kb on + strandat 4516.838 kb on + strandat 4516.838 kb on + strandat 4516.838 kb on + strandat 4516.839 kb on - strandat 4516.839 kb on - strandat 4516.849 kb on + strandat 4516.849 kb on + strandat 4516.850 kb on - strandat 4516.850 kb on - strandat 4516.850 kb on - strandat 4516.869 kb on + strandat 4516.889 kb on + strandat 4516.889 kb on + strandat 4516.890 kb on - strandat 4516.890 kb on - strandat 4516.890 kb on - strandat 4516.916 kb on + strandat 4517.001 kb on + strandat 4517.001 kb on + strandat 4517.002 kb on - strandat 4517.296 kb on + strand, within Psyr_3800at 4517.296 kb on + strand, within Psyr_3800at 4517.297 kb on - strand, within Psyr_3800at 4517.297 kb on - strand, within Psyr_3800at 4517.297 kb on - strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.329 kb on + strand, within Psyr_3800at 4517.330 kb on - strand, within Psyr_3800at 4517.330 kb on - strand, within Psyr_3800at 4517.330 kb on - strand, within Psyr_3800at 4517.425 kb on + strand, within Psyr_3800at 4517.425 kb on + strand, within Psyr_3800at 4517.426 kb on - strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.629 kb on + strand, within Psyr_3800at 4517.630 kb on - strand, within Psyr_3800at 4517.630 kb on - strand, within Psyr_3800at 4517.630 kb on - strand, within Psyr_3800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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4,514,909 - Psyr_3797 0.68 +0.4
4,515,064 + Psyr_3797 0.88 +0.9
4,515,161 - +0.6
4,515,207 + +0.2
4,515,284 + +0.6
4,515,285 - -1.0
4,515,317 + +0.4
4,515,318 - -0.2
4,515,388 + Psyr_3798 0.21 +1.2
4,515,388 + Psyr_3798 0.21 -1.8
4,515,457 + Psyr_3798 0.34 +0.2
4,515,457 + Psyr_3798 0.34 -0.1
4,515,457 + Psyr_3798 0.34 +0.3
4,515,457 + Psyr_3798 0.34 -0.3
4,515,457 + Psyr_3798 0.34 +1.6
4,515,457 + Psyr_3798 0.34 -0.6
4,515,458 - Psyr_3798 0.34 +0.2
4,515,458 - Psyr_3798 0.34 +0.9
4,515,458 - Psyr_3798 0.34 -1.6
4,515,458 - Psyr_3798 0.34 +1.7
4,515,458 - Psyr_3798 0.34 -0.9
4,515,458 - Psyr_3798 0.34 +0.2
4,515,458 - Psyr_3798 0.34 +0.4
4,515,458 - Psyr_3798 0.34 +0.5
4,515,458 - Psyr_3798 0.34 -0.4
4,515,458 - Psyr_3798 0.34 +0.4
4,515,458 - Psyr_3798 0.34 -2.0
4,515,458 - Psyr_3798 0.34 +0.7
4,515,458 - Psyr_3798 0.34 +0.9
4,515,458 - Psyr_3798 0.34 +1.0
4,515,458 - Psyr_3798 0.34 +2.1
4,515,573 - Psyr_3798 0.57 +1.1
4,515,646 + Psyr_3798 0.71 -0.7
4,515,646 + Psyr_3798 0.71 +0.2
4,515,647 - Psyr_3798 0.71 -0.5
4,515,647 - Psyr_3798 0.71 +0.6
4,515,650 - Psyr_3798 0.72 -0.1
4,515,682 - Psyr_3798 0.78 -0.3
4,515,694 + Psyr_3798 0.80 +0.1
4,515,694 + Psyr_3798 0.80 +0.9
4,515,694 + Psyr_3798 0.80 -0.5
4,515,694 + Psyr_3798 0.80 +0.8
4,515,695 - Psyr_3798 0.80 -2.6
4,515,736 - Psyr_3798 0.88 -1.6
4,515,765 - -1.4
4,515,854 + +0.5
4,515,855 - +0.2
4,515,980 + Psyr_3799 0.12 -0.9
4,515,981 - Psyr_3799 0.12 +0.3
4,516,178 + Psyr_3799 0.32 +0.0
4,516,222 + Psyr_3799 0.36 -0.5
4,516,238 + Psyr_3799 0.37 +0.1
4,516,238 + Psyr_3799 0.37 +0.5
4,516,238 + Psyr_3799 0.37 -2.2
4,516,239 - Psyr_3799 0.38 +0.9
4,516,246 - Psyr_3799 0.38 -1.2
4,516,259 + Psyr_3799 0.39 +0.7
4,516,260 - Psyr_3799 0.40 -1.6
4,516,260 - Psyr_3799 0.40 -0.4
4,516,361 + Psyr_3799 0.49 +0.6
4,516,361 + Psyr_3799 0.49 +1.4
4,516,361 + Psyr_3799 0.49 -1.6
4,516,361 + Psyr_3799 0.49 +0.5
4,516,361 + Psyr_3799 0.49 -0.8
4,516,361 + Psyr_3799 0.49 +0.4
4,516,361 + Psyr_3799 0.49 -0.3
4,516,361 + Psyr_3799 0.49 -0.8
4,516,361 + Psyr_3799 0.49 -2.3
4,516,361 + Psyr_3799 0.49 +0.4
4,516,361 + Psyr_3799 0.49 +0.6
4,516,361 + Psyr_3799 0.49 +0.3
4,516,361 + Psyr_3799 0.49 +1.1
4,516,361 + Psyr_3799 0.49 +0.4
4,516,361 + Psyr_3799 0.49 -2.2
4,516,361 + Psyr_3799 0.49 -0.7
4,516,361 + Psyr_3799 0.49 -0.6
4,516,361 + Psyr_3799 0.49 +0.8
4,516,361 + Psyr_3799 0.49 +0.4
4,516,362 - Psyr_3799 0.49 -0.6
4,516,362 - Psyr_3799 0.49 -0.8
4,516,362 - Psyr_3799 0.49 -0.6
4,516,362 - Psyr_3799 0.49 -0.4
4,516,362 - Psyr_3799 0.49 -1.3
4,516,362 - Psyr_3799 0.49 -2.6
4,516,362 - Psyr_3799 0.49 +0.2
4,516,362 - Psyr_3799 0.49 +0.1
4,516,362 - Psyr_3799 0.49 -1.1
4,516,362 - Psyr_3799 0.49 +0.6
4,516,362 - Psyr_3799 0.49 +1.4
4,516,362 - Psyr_3799 0.49 -0.6
4,516,362 - Psyr_3799 0.49 -0.8
4,516,362 - Psyr_3799 0.49 -0.2
4,516,362 - Psyr_3799 0.49 -0.4
4,516,362 - Psyr_3799 0.49 +1.1
4,516,362 - Psyr_3799 0.49 -0.4
4,516,542 + Psyr_3799 0.67 -1.2
4,516,543 - Psyr_3799 0.67 -3.7
4,516,543 - Psyr_3799 0.67 -1.6
4,516,543 - Psyr_3799 0.67 -1.4
4,516,543 - Psyr_3799 0.67 +1.4
4,516,625 + Psyr_3799 0.75 +1.4
4,516,626 - Psyr_3799 0.75 +0.7
4,516,626 - Psyr_3799 0.75 -0.8
4,516,690 - Psyr_3799 0.81 -0.1
4,516,690 - Psyr_3799 0.81 +0.4
4,516,714 + Psyr_3799 0.84 +0.3
4,516,716 + Psyr_3799 0.84 -0.2
4,516,716 + Psyr_3799 0.84 -0.2
4,516,717 - Psyr_3799 0.84 -1.9
4,516,745 + Psyr_3799 0.87 +2.1
4,516,745 + Psyr_3799 0.87 +0.2
4,516,745 + Psyr_3799 0.87 -1.6
4,516,745 + Psyr_3799 0.87 -0.1
4,516,745 + Psyr_3799 0.87 -0.3
4,516,746 - Psyr_3799 0.87 -2.8
4,516,793 + -0.0
4,516,838 + +0.6
4,516,838 + +1.2
4,516,838 + -0.6
4,516,839 - -0.3
4,516,839 - -1.0
4,516,849 + -0.5
4,516,849 + +0.8
4,516,850 - -0.0
4,516,850 - -1.2
4,516,850 - -0.9
4,516,869 + +1.0
4,516,889 + +0.8
4,516,889 + +0.4
4,516,890 - +0.1
4,516,890 - -0.6
4,516,890 - -0.6
4,516,916 + +1.0
4,517,001 + -0.7
4,517,001 + +3.4
4,517,002 - +0.6
4,517,296 + Psyr_3800 0.33 +0.5
4,517,296 + Psyr_3800 0.33 +0.7
4,517,297 - Psyr_3800 0.33 +1.2
4,517,297 - Psyr_3800 0.33 +0.5
4,517,297 - Psyr_3800 0.33 +0.7
4,517,329 + Psyr_3800 0.36 +0.1
4,517,329 + Psyr_3800 0.36 +0.2
4,517,329 + Psyr_3800 0.36 +0.5
4,517,329 + Psyr_3800 0.36 +0.0
4,517,330 - Psyr_3800 0.36 -1.1
4,517,330 - Psyr_3800 0.36 -0.6
4,517,330 - Psyr_3800 0.36 +0.0
4,517,425 + Psyr_3800 0.43 +0.7
4,517,425 + Psyr_3800 0.43 -0.1
4,517,426 - Psyr_3800 0.43 +0.4
4,517,629 + Psyr_3800 0.59 -0.3
4,517,629 + Psyr_3800 0.59 +0.2
4,517,629 + Psyr_3800 0.59 +0.1
4,517,629 + Psyr_3800 0.59 +0.2
4,517,629 + Psyr_3800 0.59 -0.7
4,517,629 + Psyr_3800 0.59 +0.3
4,517,630 - Psyr_3800 0.60 +0.1
4,517,630 - Psyr_3800 0.60 -0.3
4,517,630 - Psyr_3800 0.60 +0.8

Or see this region's nucleotide sequence