Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3716 and Psyr_3717 are separated by 708 nucleotides Psyr_3717 and Psyr_3718 are separated by 132 nucleotides Psyr_3718 and Psyr_3719 are separated by 113 nucleotides
Psyr_3716: Psyr_3716 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,402,990 to 4,403,733
_3716
Psyr_3717: Psyr_3717 - Ribonucleoside-diphosphate reductase, at 4,404,442 to 4,407,354
_3717
Psyr_3718: Psyr_3718 - hypothetical protein, at 4,407,487 to 4,407,840
_3718
Psyr_3719: Psyr_3719 - hypothetical protein, at 4,407,954 to 4,408,313
_3719
Position (kb) 4404
4405
4406
4407
4408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.452 kb on + strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.453 kb on - strand, within Psyr_3716 at 4403.454 kb on + strand, within Psyr_3716 at 4403.455 kb on - strand, within Psyr_3716 at 4403.455 kb on - strand, within Psyr_3716 at 4403.704 kb on + strand at 4403.704 kb on + strand at 4403.704 kb on + strand at 4403.704 kb on + strand at 4403.704 kb on + strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.705 kb on - strand at 4403.806 kb on + strand at 4403.806 kb on + strand at 4403.806 kb on + strand at 4403.806 kb on + strand at 4403.806 kb on + strand at 4403.846 kb on + strand at 4403.846 kb on + strand at 4403.847 kb on - strand at 4403.969 kb on + strand at 4403.970 kb on - strand at 4403.970 kb on - strand at 4403.970 kb on - strand at 4403.973 kb on + strand at 4403.974 kb on - strand at 4403.974 kb on - strand at 4404.004 kb on + strand at 4404.004 kb on + strand at 4404.004 kb on + strand at 4404.004 kb on + strand at 4404.005 kb on - strand at 4404.013 kb on + strand at 4404.013 kb on + strand at 4404.013 kb on + strand at 4404.013 kb on + strand at 4404.013 kb on + strand at 4404.013 kb on + strand at 4404.014 kb on - strand at 4404.025 kb on - strand at 4404.065 kb on + strand at 4404.065 kb on + strand at 4404.095 kb on + strand at 4404.095 kb on + strand at 4404.095 kb on + strand at 4404.095 kb on + strand at 4404.095 kb on + strand at 4404.095 kb on + strand at 4404.095 kb on + strand at 4404.113 kb on + strand at 4407.353 kb on - strand at 4407.361 kb on + strand at 4407.362 kb on - strand at 4407.440 kb on + strand at 4407.441 kb on - strand at 4407.508 kb on - strand at 4407.508 kb on - strand at 4407.515 kb on + strand at 4407.516 kb on - strand at 4407.516 kb on - strand at 4407.517 kb on + strand at 4407.517 kb on + strand at 4407.517 kb on + strand at 4407.517 kb on + strand at 4407.518 kb on - strand at 4407.518 kb on - strand at 4407.518 kb on - strand at 4407.518 kb on - strand at 4407.535 kb on + strand, within Psyr_3718 at 4407.535 kb on + strand, within Psyr_3718 at 4407.535 kb on + strand, within Psyr_3718 at 4407.542 kb on + strand, within Psyr_3718 at 4407.543 kb on - strand, within Psyr_3718 at 4407.606 kb on - strand, within Psyr_3718 at 4407.672 kb on + strand, within Psyr_3718 at 4407.673 kb on - strand, within Psyr_3718 at 4407.707 kb on + strand, within Psyr_3718 at 4407.707 kb on + strand, within Psyr_3718 at 4407.707 kb on + strand, within Psyr_3718 at 4407.707 kb on + strand, within Psyr_3718 at 4407.708 kb on - strand, within Psyr_3718 at 4407.708 kb on - strand, within Psyr_3718 at 4407.708 kb on - strand, within Psyr_3718 at 4407.816 kb on + strand at 4407.816 kb on + strand at 4407.817 kb on - strand at 4407.817 kb on - strand at 4407.817 kb on - strand at 4407.822 kb on + strand at 4407.823 kb on - strand at 4407.831 kb on + strand at 4407.831 kb on + strand at 4407.832 kb on - strand at 4407.832 kb on - strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.856 kb on + strand at 4407.857 kb on - strand at 4407.857 kb on - strand at 4407.857 kb on - strand at 4407.857 kb on - strand at 4407.857 kb on - strand at 4407.859 kb on + strand at 4407.859 kb on + strand at 4407.860 kb on - strand at 4407.860 kb on - strand at 4407.860 kb on - strand at 4407.871 kb on - strand at 4407.897 kb on + strand at 4407.944 kb on - strand at 4407.974 kb on + strand at 4407.974 kb on + strand at 4407.974 kb on + strand at 4407.974 kb on + strand at 4407.975 kb on - strand at 4408.079 kb on + strand, within Psyr_3719 at 4408.079 kb on + strand, within Psyr_3719 at 4408.080 kb on - strand, within Psyr_3719 at 4408.080 kb on - strand, within Psyr_3719 at 4408.089 kb on - strand, within Psyr_3719 at 4408.089 kb on - strand, within Psyr_3719 at 4408.097 kb on + strand, within Psyr_3719 at 4408.142 kb on + strand, within Psyr_3719 at 4408.143 kb on - strand, within Psyr_3719 at 4408.160 kb on + strand, within Psyr_3719 at 4408.187 kb on - strand, within Psyr_3719 at 4408.187 kb on - strand, within Psyr_3719 at 4408.187 kb on - strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.219 kb on + strand, within Psyr_3719 at 4408.220 kb on - strand, within Psyr_3719 at 4408.220 kb on - strand, within Psyr_3719 at 4408.220 kb on - strand, within Psyr_3719 at 4408.220 kb on - strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.263 kb on + strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.264 kb on - strand, within Psyr_3719 at 4408.268 kb on - strand, within Psyr_3719 at 4408.268 kb on - strand, within Psyr_3719 at 4408.311 kb on + strand at 4408.312 kb on - strand at 4408.330 kb on - strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.331 kb on + strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand at 4408.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 4,403,452 + Psyr_3716 0.62 +0.4 4,403,452 + Psyr_3716 0.62 +0.3 4,403,452 + Psyr_3716 0.62 +0.6 4,403,452 + Psyr_3716 0.62 -0.8 4,403,452 + Psyr_3716 0.62 -0.2 4,403,452 + Psyr_3716 0.62 +0.3 4,403,452 + Psyr_3716 0.62 +0.9 4,403,452 + Psyr_3716 0.62 +0.7 4,403,452 + Psyr_3716 0.62 +0.4 4,403,452 + Psyr_3716 0.62 +1.1 4,403,452 + Psyr_3716 0.62 -0.2 4,403,452 + Psyr_3716 0.62 -1.0 4,403,452 + Psyr_3716 0.62 +0.0 4,403,452 + Psyr_3716 0.62 -0.0 4,403,452 + Psyr_3716 0.62 +0.4 4,403,453 - Psyr_3716 0.62 -1.1 4,403,453 - Psyr_3716 0.62 -1.7 4,403,453 - Psyr_3716 0.62 +0.1 4,403,453 - Psyr_3716 0.62 +0.3 4,403,453 - Psyr_3716 0.62 +0.6 4,403,453 - Psyr_3716 0.62 -0.1 4,403,453 - Psyr_3716 0.62 +0.7 4,403,453 - Psyr_3716 0.62 -0.1 4,403,453 - Psyr_3716 0.62 -0.3 4,403,453 - Psyr_3716 0.62 -0.2 4,403,453 - Psyr_3716 0.62 +0.7 4,403,453 - Psyr_3716 0.62 +0.2 4,403,453 - Psyr_3716 0.62 +0.8 4,403,453 - Psyr_3716 0.62 -0.4 4,403,453 - Psyr_3716 0.62 -0.3 4,403,453 - Psyr_3716 0.62 -0.0 4,403,454 + Psyr_3716 0.62 -0.3 4,403,455 - Psyr_3716 0.62 +0.2 4,403,455 - Psyr_3716 0.62 +0.8 4,403,704 + +1.1 4,403,704 + +0.4 4,403,704 + -0.6 4,403,704 + -0.5 4,403,704 + +1.2 4,403,705 - -0.1 4,403,705 - -0.5 4,403,705 - -0.4 4,403,705 - -0.2 4,403,705 - -1.2 4,403,705 - -0.2 4,403,705 - +0.4 4,403,705 - -0.9 4,403,705 - +0.7 4,403,806 + -0.8 4,403,806 + +1.2 4,403,806 + +0.5 4,403,806 + -1.3 4,403,806 + -1.5 4,403,846 + +0.3 4,403,846 + -0.5 4,403,847 - -0.5 4,403,969 + +0.2 4,403,970 - -0.3 4,403,970 - +0.8 4,403,970 - -0.1 4,403,973 + +0.5 4,403,974 - +0.2 4,403,974 - -1.0 4,404,004 + -1.1 4,404,004 + -1.0 4,404,004 + -0.3 4,404,004 + -0.2 4,404,005 - -0.0 4,404,013 + -1.3 4,404,013 + -0.3 4,404,013 + -1.7 4,404,013 + -1.6 4,404,013 + -0.7 4,404,013 + -0.8 4,404,014 - -2.2 4,404,025 - -0.6 4,404,065 + -2.4 4,404,065 + -2.0 4,404,095 + -1.0 4,404,095 + +1.1 4,404,095 + +0.6 4,404,095 + +3.4 4,404,095 + -0.5 4,404,095 + -0.0 4,404,095 + -0.5 4,404,113 + -2.4 4,407,353 - +1.2 4,407,361 + +1.4 4,407,362 - -0.0 4,407,440 + +0.2 4,407,441 - -1.6 4,407,508 - -1.0 4,407,508 - -0.3 4,407,515 + +0.9 4,407,516 - +0.7 4,407,516 - -1.4 4,407,517 + -0.2 4,407,517 + +0.8 4,407,517 + +0.2 4,407,517 + -0.4 4,407,518 - +0.1 4,407,518 - +1.1 4,407,518 - +0.3 4,407,518 - +0.1 4,407,535 + Psyr_3718 0.14 -0.4 4,407,535 + Psyr_3718 0.14 +0.6 4,407,535 + Psyr_3718 0.14 +0.3 4,407,542 + Psyr_3718 0.16 +0.1 4,407,543 - Psyr_3718 0.16 -0.7 4,407,606 - Psyr_3718 0.34 -0.2 4,407,672 + Psyr_3718 0.52 -0.3 4,407,673 - Psyr_3718 0.53 +1.7 4,407,707 + Psyr_3718 0.62 +1.8 4,407,707 + Psyr_3718 0.62 +1.9 4,407,707 + Psyr_3718 0.62 -0.8 4,407,707 + Psyr_3718 0.62 -0.8 4,407,708 - Psyr_3718 0.62 +0.9 4,407,708 - Psyr_3718 0.62 -2.8 4,407,708 - Psyr_3718 0.62 -1.1 4,407,816 + +0.4 4,407,816 + -1.0 4,407,817 - -0.6 4,407,817 - +0.4 4,407,817 - +0.4 4,407,822 + -1.5 4,407,823 - +1.1 4,407,831 + -1.2 4,407,831 + +0.9 4,407,832 - +0.2 4,407,832 - +0.4 4,407,856 + +0.6 4,407,856 + -0.2 4,407,856 + -0.1 4,407,856 + +0.0 4,407,856 + +0.0 4,407,856 + +0.1 4,407,856 + +1.0 4,407,856 + +0.8 4,407,856 + +0.1 4,407,856 + +0.7 4,407,856 + -0.5 4,407,856 + +0.9 4,407,857 - +0.1 4,407,857 - +0.4 4,407,857 - +0.7 4,407,857 - +0.6 4,407,857 - -0.0 4,407,859 + -2.5 4,407,859 + -1.2 4,407,860 - -0.4 4,407,860 - -0.8 4,407,860 - +0.2 4,407,871 - -0.6 4,407,897 + -0.7 4,407,944 - +0.2 4,407,974 + +1.0 4,407,974 + -0.2 4,407,974 + -0.1 4,407,974 + -1.8 4,407,975 - -0.1 4,408,079 + Psyr_3719 0.35 -1.2 4,408,079 + Psyr_3719 0.35 -1.1 4,408,080 - Psyr_3719 0.35 +0.3 4,408,080 - Psyr_3719 0.35 -1.8 4,408,089 - Psyr_3719 0.38 -1.3 4,408,089 - Psyr_3719 0.38 -0.4 4,408,097 + Psyr_3719 0.40 +0.0 4,408,142 + Psyr_3719 0.52 +0.5 4,408,143 - Psyr_3719 0.53 -2.5 4,408,160 + Psyr_3719 0.57 +0.3 4,408,187 - Psyr_3719 0.65 +0.1 4,408,187 - Psyr_3719 0.65 +0.2 4,408,187 - Psyr_3719 0.65 -2.6 4,408,219 + Psyr_3719 0.74 -1.0 4,408,219 + Psyr_3719 0.74 +0.7 4,408,219 + Psyr_3719 0.74 +1.9 4,408,219 + Psyr_3719 0.74 +0.4 4,408,219 + Psyr_3719 0.74 +0.3 4,408,219 + Psyr_3719 0.74 -0.5 4,408,219 + Psyr_3719 0.74 +1.4 4,408,219 + Psyr_3719 0.74 +0.3 4,408,220 - Psyr_3719 0.74 -0.3 4,408,220 - Psyr_3719 0.74 +0.1 4,408,220 - Psyr_3719 0.74 +0.2 4,408,220 - Psyr_3719 0.74 -0.1 4,408,263 + Psyr_3719 0.86 +1.0 4,408,263 + Psyr_3719 0.86 +1.6 4,408,263 + Psyr_3719 0.86 +0.7 4,408,263 + Psyr_3719 0.86 +0.6 4,408,263 + Psyr_3719 0.86 +0.9 4,408,263 + Psyr_3719 0.86 +0.6 4,408,263 + Psyr_3719 0.86 -1.1 4,408,264 - Psyr_3719 0.86 +0.6 4,408,264 - Psyr_3719 0.86 -1.8 4,408,264 - Psyr_3719 0.86 -0.2 4,408,264 - Psyr_3719 0.86 -1.1 4,408,264 - Psyr_3719 0.86 -1.6 4,408,264 - Psyr_3719 0.86 +0.7 4,408,264 - Psyr_3719 0.86 -0.3 4,408,264 - Psyr_3719 0.86 -0.5 4,408,264 - Psyr_3719 0.86 +0.2 4,408,264 - Psyr_3719 0.86 -0.9 4,408,268 - Psyr_3719 0.87 -0.2 4,408,268 - Psyr_3719 0.87 -1.8 4,408,311 + -0.7 4,408,312 - +0.3 4,408,330 - +1.0 4,408,331 + -1.8 4,408,331 + -1.4 4,408,331 + +1.1 4,408,331 + -1.9 4,408,331 + +0.1 4,408,331 + +0.4 4,408,331 + -0.2 4,408,331 + -0.0 4,408,331 + -0.6 4,408,331 + +0.4 4,408,331 + -0.8 4,408,331 + -0.9 4,408,331 + -1.2 4,408,331 + +0.4 4,408,331 + -0.6 4,408,331 + +0.4 4,408,331 + -2.3 4,408,332 - -0.1 4,408,332 - +1.0 4,408,332 - -0.5 4,408,332 - -1.2 4,408,332 - +0.7 4,408,332 - +0.2 4,408,332 - +0.9 4,408,332 - -0.8 4,408,332 - -1.4 4,408,332 - +0.1 4,408,332 - -0.1 4,408,332 - +0.7 4,408,332 - -0.3 4,408,332 - +0.2 4,408,332 - -1.2 4,408,332 - +0.2 4,408,332 - +0.4
Or see this region's nucleotide sequence