Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3683 and Psyr_3684 are separated by 89 nucleotides Psyr_3684 and Psyr_3685 are separated by 75 nucleotides Psyr_3685 and Psyr_3686 are separated by 14 nucleotides Psyr_3686 and Psyr_3687 are separated by 135 nucleotides
Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544
_3683
Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362
_3684
Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181
_3685
Psyr_3686: Psyr_3686 - regulatory inactivation of DnaA Hda protein, at 4,372,196 to 4,372,981
_3686
Psyr_3687: Psyr_3687 - Protein of unknown function UPF0118, at 4,373,117 to 4,374,190
_3687
Position (kb) 4371
4372
4373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4370.544 kb on + strand at 4370.558 kb on + strand at 4370.573 kb on + strand at 4370.574 kb on - strand at 4370.574 kb on - strand at 4370.631 kb on + strand at 4370.632 kb on - strand at 4370.635 kb on + strand at 4370.635 kb on + strand at 4370.635 kb on + strand at 4370.636 kb on - strand at 4370.667 kb on - strand at 4370.713 kb on - strand, within Psyr_3684 at 4370.855 kb on - strand, within Psyr_3684 at 4371.130 kb on + strand, within Psyr_3684 at 4371.290 kb on + strand at 4371.290 kb on + strand at 4371.291 kb on - strand at 4371.382 kb on + strand at 4371.386 kb on + strand at 4371.386 kb on + strand at 4371.386 kb on + strand at 4371.386 kb on + strand at 4371.400 kb on + strand at 4371.401 kb on - strand at 4371.410 kb on - strand at 4371.450 kb on + strand at 4371.719 kb on + strand, within Psyr_3685 at 4371.720 kb on - strand, within Psyr_3685 at 4371.733 kb on - strand, within Psyr_3685 at 4371.733 kb on - strand, within Psyr_3685 at 4371.865 kb on + strand, within Psyr_3685 at 4371.931 kb on + strand, within Psyr_3685 at 4371.932 kb on - strand, within Psyr_3685 at 4371.985 kb on + strand, within Psyr_3685 at 4371.985 kb on + strand, within Psyr_3685 at 4371.985 kb on + strand, within Psyr_3685 at 4371.986 kb on - strand, within Psyr_3685 at 4371.986 kb on - strand, within Psyr_3685 at 4371.986 kb on - strand, within Psyr_3685 at 4372.072 kb on + strand, within Psyr_3685 at 4372.072 kb on + strand, within Psyr_3685 at 4372.073 kb on - strand, within Psyr_3685 at 4372.073 kb on - strand, within Psyr_3685 at 4372.073 kb on - strand, within Psyr_3685 at 4372.094 kb on - strand, within Psyr_3685 at 4372.197 kb on + strand at 4372.197 kb on + strand at 4372.958 kb on - strand at 4373.118 kb on + strand at 4373.119 kb on - strand at 4373.145 kb on + strand at 4373.145 kb on + strand at 4373.146 kb on - strand at 4373.163 kb on + strand at 4373.163 kb on + strand at 4373.164 kb on - strand at 4373.164 kb on - strand at 4373.164 kb on - strand at 4373.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 4,370,544 + -0.2 4,370,558 + +0.6 4,370,573 + -2.2 4,370,574 - -0.3 4,370,574 - -0.8 4,370,631 + -1.6 4,370,632 - -1.0 4,370,635 + +0.2 4,370,635 + -0.5 4,370,635 + +0.4 4,370,636 - -1.5 4,370,667 - +1.2 4,370,713 - Psyr_3684 0.11 +0.4 4,370,855 - Psyr_3684 0.30 +1.4 4,371,130 + Psyr_3684 0.68 -2.9 4,371,290 + -2.5 4,371,290 + +1.7 4,371,291 - +0.0 4,371,382 + -0.6 4,371,386 + -0.8 4,371,386 + -1.4 4,371,386 + +1.9 4,371,386 + -1.9 4,371,400 + -1.6 4,371,401 - -0.6 4,371,410 - +0.4 4,371,450 + +1.7 4,371,719 + Psyr_3685 0.38 +0.5 4,371,720 - Psyr_3685 0.38 +0.2 4,371,733 - Psyr_3685 0.40 -0.6 4,371,733 - Psyr_3685 0.40 -0.9 4,371,865 + Psyr_3685 0.57 -1.4 4,371,931 + Psyr_3685 0.66 +0.6 4,371,932 - Psyr_3685 0.66 -0.4 4,371,985 + Psyr_3685 0.74 +2.4 4,371,985 + Psyr_3685 0.74 -1.6 4,371,985 + Psyr_3685 0.74 -1.4 4,371,986 - Psyr_3685 0.74 -1.6 4,371,986 - Psyr_3685 0.74 -1.1 4,371,986 - Psyr_3685 0.74 +0.4 4,372,072 + Psyr_3685 0.85 -0.6 4,372,072 + Psyr_3685 0.85 +0.4 4,372,073 - Psyr_3685 0.85 -0.7 4,372,073 - Psyr_3685 0.85 -1.6 4,372,073 - Psyr_3685 0.85 -2.9 4,372,094 - Psyr_3685 0.88 +0.9 4,372,197 + -0.4 4,372,197 + -1.9 4,372,958 - -0.2 4,373,118 + -1.9 4,373,119 - -1.2 4,373,145 + -1.4 4,373,145 + -0.6 4,373,146 - -0.4 4,373,163 + -1.4 4,373,163 + -0.9 4,373,164 - -0.0 4,373,164 - +0.9 4,373,164 - +0.7 4,373,164 - +0.7
Or see this region's nucleotide sequence