Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3422

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3421 and Psyr_3422 are separated by 108 nucleotidesPsyr_3422 and Psyr_3423 are separated by 95 nucleotides Psyr_3421: Psyr_3421 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 4,084,022 to 4,086,496 _3421 Psyr_3422: Psyr_3422 - membrane protein, putative, at 4,086,605 to 4,087,354 _3422 Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835 _3423 Position (kb) 4086 4087 4088Strain fitness (log2 ratio) -2 -1 0 1at 4086.487 kb on + strandat 4086.487 kb on + strandat 4086.487 kb on + strandat 4086.487 kb on + strandat 4086.487 kb on + strandat 4087.296 kb on + strandat 4087.361 kb on + strandat 4087.493 kb on - strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.515 kb on + strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.516 kb on - strandat 4087.546 kb on - strandat 4087.618 kb on + strand, within Psyr_3423at 4087.619 kb on - strand, within Psyr_3423at 4087.619 kb on - strand, within Psyr_3423at 4087.619 kb on - strand, within Psyr_3423at 4087.654 kb on + strand, within Psyr_3423at 4087.654 kb on + strand, within Psyr_3423at 4087.654 kb on + strand, within Psyr_3423at 4087.730 kb on + strand, within Psyr_3423at 4087.730 kb on + strand, within Psyr_3423at 4087.731 kb on - strand, within Psyr_3423at 4087.731 kb on - strand, within Psyr_3423at 4087.731 kb on - strand, within Psyr_3423at 4087.731 kb on - strand, within Psyr_3423at 4087.885 kb on + strand, within Psyr_3423at 4087.885 kb on + strand, within Psyr_3423at 4087.886 kb on - strand, within Psyr_3423at 4088.095 kb on + strand, within Psyr_3423at 4088.096 kb on - strand, within Psyr_3423at 4088.096 kb on - strand, within Psyr_3423at 4088.096 kb on - strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.185 kb on + strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.186 kb on - strand, within Psyr_3423at 4088.311 kb on + strand, within Psyr_3423at 4088.312 kb on - strand, within Psyr_3423at 4088.312 kb on - strand, within Psyr_3423at 4088.312 kb on - strand, within Psyr_3423

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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4,086,487 + -0.1
4,086,487 + -0.9
4,086,487 + -0.7
4,086,487 + +0.7
4,086,487 + +0.5
4,087,296 + -1.5
4,087,361 + -1.7
4,087,493 - +0.0
4,087,515 + +0.0
4,087,515 + +1.3
4,087,515 + -1.3
4,087,515 + -0.0
4,087,515 + -1.7
4,087,515 + +1.7
4,087,515 + -0.6
4,087,515 + +0.7
4,087,515 + -2.1
4,087,515 + +0.0
4,087,515 + -0.8
4,087,515 + +0.3
4,087,516 - +0.2
4,087,516 - -1.4
4,087,516 - +1.2
4,087,516 - -0.2
4,087,516 - +0.1
4,087,516 - +0.9
4,087,516 - +0.1
4,087,516 - +0.9
4,087,516 - +0.3
4,087,516 - +0.1
4,087,546 - -0.6
4,087,618 + Psyr_3423 0.12 +0.7
4,087,619 - Psyr_3423 0.12 -0.3
4,087,619 - Psyr_3423 0.12 -0.9
4,087,619 - Psyr_3423 0.12 -0.1
4,087,654 + Psyr_3423 0.15 -0.2
4,087,654 + Psyr_3423 0.15 -0.4
4,087,654 + Psyr_3423 0.15 -0.1
4,087,730 + Psyr_3423 0.20 +1.1
4,087,730 + Psyr_3423 0.20 -0.3
4,087,731 - Psyr_3423 0.20 -0.8
4,087,731 - Psyr_3423 0.20 +1.1
4,087,731 - Psyr_3423 0.20 +0.2
4,087,731 - Psyr_3423 0.20 +0.5
4,087,885 + Psyr_3423 0.31 -0.2
4,087,885 + Psyr_3423 0.31 -0.3
4,087,886 - Psyr_3423 0.31 +0.6
4,088,095 + Psyr_3423 0.47 +0.1
4,088,096 - Psyr_3423 0.47 +0.7
4,088,096 - Psyr_3423 0.47 -0.7
4,088,096 - Psyr_3423 0.47 -0.7
4,088,185 + Psyr_3423 0.53 +0.1
4,088,185 + Psyr_3423 0.53 -0.3
4,088,185 + Psyr_3423 0.53 -1.4
4,088,185 + Psyr_3423 0.53 +0.2
4,088,185 + Psyr_3423 0.53 +0.1
4,088,185 + Psyr_3423 0.53 +1.0
4,088,185 + Psyr_3423 0.53 -0.5
4,088,185 + Psyr_3423 0.53 +0.5
4,088,185 + Psyr_3423 0.53 +1.1
4,088,186 - Psyr_3423 0.53 +0.1
4,088,186 - Psyr_3423 0.53 -1.3
4,088,186 - Psyr_3423 0.53 -0.4
4,088,186 - Psyr_3423 0.53 +0.4
4,088,186 - Psyr_3423 0.53 +1.1
4,088,186 - Psyr_3423 0.53 -0.7
4,088,311 + Psyr_3423 0.62 +0.5
4,088,312 - Psyr_3423 0.62 -0.5
4,088,312 - Psyr_3423 0.62 -1.8
4,088,312 - Psyr_3423 0.62 -0.1

Or see this region's nucleotide sequence