Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3371

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3370 and Psyr_3371 are separated by 565 nucleotidesPsyr_3371 and Psyr_3372 overlap by 4 nucleotidesPsyr_3372 and Psyr_3373 are separated by 74 nucleotides Psyr_3370: Psyr_3370 - Protein of unknown function DUF451, at 4,029,281 to 4,030,138 _3370 Psyr_3371: Psyr_3371 - Oxidoreductase, molybdopterin binding protein, at 4,030,704 to 4,031,474 _3371 Psyr_3372: Psyr_3372 - conserved hypothetical protein, at 4,031,471 to 4,032,091 _3372 Psyr_3373: Psyr_3373 - conserved hypothetical protein, at 4,032,166 to 4,032,771 _3373 Position (kb) 4030 4031 4032Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4029.872 kb on + strand, within Psyr_3370at 4029.873 kb on - strand, within Psyr_3370at 4030.007 kb on + strand, within Psyr_3370at 4030.007 kb on + strand, within Psyr_3370at 4030.007 kb on + strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.008 kb on - strand, within Psyr_3370at 4030.191 kb on - strandat 4030.254 kb on + strandat 4030.273 kb on + strandat 4030.282 kb on - strandat 4030.510 kb on - strandat 4030.705 kb on + strandat 4030.706 kb on - strandat 4030.726 kb on + strandat 4030.727 kb on - strandat 4030.727 kb on - strandat 4030.727 kb on - strandat 4030.764 kb on - strandat 4030.907 kb on + strand, within Psyr_3371at 4030.927 kb on + strand, within Psyr_3371at 4030.928 kb on - strand, within Psyr_3371at 4030.928 kb on - strand, within Psyr_3371at 4030.984 kb on + strand, within Psyr_3371at 4030.984 kb on + strand, within Psyr_3371at 4030.984 kb on + strand, within Psyr_3371at 4030.984 kb on + strand, within Psyr_3371at 4030.985 kb on - strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.228 kb on + strand, within Psyr_3371at 4031.230 kb on + strand, within Psyr_3371at 4031.230 kb on + strand, within Psyr_3371at 4031.230 kb on + strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.453 kb on + strandat 4031.453 kb on + strandat 4031.459 kb on + strandat 4031.533 kb on + strand, within Psyr_3372at 4031.534 kb on - strand, within Psyr_3372at 4031.607 kb on - strand, within Psyr_3372at 4031.699 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.871 kb on + strand, within Psyr_3372at 4031.872 kb on - strand, within Psyr_3372at 4031.872 kb on - strand, within Psyr_3372at 4031.872 kb on - strand, within Psyr_3372at 4031.994 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.238 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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4,029,872 + Psyr_3370 0.69 -0.0
4,029,873 - Psyr_3370 0.69 -0.2
4,030,007 + Psyr_3370 0.85 +0.9
4,030,007 + Psyr_3370 0.85 +1.1
4,030,007 + Psyr_3370 0.85 -0.7
4,030,008 - Psyr_3370 0.85 -0.3
4,030,008 - Psyr_3370 0.85 -1.0
4,030,008 - Psyr_3370 0.85 +0.0
4,030,008 - Psyr_3370 0.85 -0.2
4,030,008 - Psyr_3370 0.85 +0.0
4,030,008 - Psyr_3370 0.85 -0.3
4,030,008 - Psyr_3370 0.85 +0.1
4,030,191 - -0.3
4,030,254 + -0.1
4,030,273 + +0.0
4,030,282 - +3.7
4,030,510 - -0.9
4,030,705 + -0.5
4,030,706 - +0.2
4,030,726 + -0.3
4,030,727 - +0.8
4,030,727 - +0.9
4,030,727 - +0.4
4,030,764 - +0.4
4,030,907 + Psyr_3371 0.26 -0.2
4,030,927 + Psyr_3371 0.29 -1.1
4,030,928 - Psyr_3371 0.29 -0.8
4,030,928 - Psyr_3371 0.29 +0.2
4,030,984 + Psyr_3371 0.36 -0.3
4,030,984 + Psyr_3371 0.36 +1.1
4,030,984 + Psyr_3371 0.36 -0.6
4,030,984 + Psyr_3371 0.36 -0.7
4,030,985 - Psyr_3371 0.36 -0.4
4,031,176 + Psyr_3371 0.61 -1.0
4,031,176 + Psyr_3371 0.61 -1.7
4,031,176 + Psyr_3371 0.61 -2.1
4,031,176 + Psyr_3371 0.61 -1.4
4,031,176 + Psyr_3371 0.61 +0.9
4,031,177 - Psyr_3371 0.61 -0.5
4,031,177 - Psyr_3371 0.61 +0.4
4,031,177 - Psyr_3371 0.61 +0.3
4,031,177 - Psyr_3371 0.61 +0.2
4,031,228 + Psyr_3371 0.68 -0.5
4,031,230 + Psyr_3371 0.68 -2.3
4,031,230 + Psyr_3371 0.68 -0.3
4,031,230 + Psyr_3371 0.68 -0.3
4,031,231 - Psyr_3371 0.68 +0.2
4,031,231 - Psyr_3371 0.68 +0.7
4,031,231 - Psyr_3371 0.68 -0.5
4,031,231 - Psyr_3371 0.68 -0.5
4,031,453 + -0.5
4,031,453 + -1.3
4,031,459 + +1.3
4,031,533 + Psyr_3372 0.10 -2.1
4,031,534 - Psyr_3372 0.10 +1.5
4,031,607 - Psyr_3372 0.22 +1.3
4,031,699 + Psyr_3372 0.37 +0.1
4,031,724 + Psyr_3372 0.41 +0.7
4,031,724 + Psyr_3372 0.41 +0.5
4,031,724 + Psyr_3372 0.41 +0.5
4,031,724 + Psyr_3372 0.41 +0.1
4,031,724 + Psyr_3372 0.41 -0.3
4,031,724 + Psyr_3372 0.41 -1.6
4,031,725 - Psyr_3372 0.41 +1.4
4,031,725 - Psyr_3372 0.41 +0.3
4,031,725 - Psyr_3372 0.41 +1.2
4,031,725 - Psyr_3372 0.41 -0.1
4,031,725 - Psyr_3372 0.41 -0.5
4,031,725 - Psyr_3372 0.41 +0.4
4,031,871 + Psyr_3372 0.64 -0.0
4,031,872 - Psyr_3372 0.65 -0.6
4,031,872 - Psyr_3372 0.65 +0.8
4,031,872 - Psyr_3372 0.65 +1.1
4,031,994 + Psyr_3372 0.84 -0.5
4,032,019 + Psyr_3372 0.88 -0.3
4,032,019 + Psyr_3372 0.88 -0.5
4,032,019 + Psyr_3372 0.88 +0.6
4,032,019 + Psyr_3372 0.88 -0.4
4,032,019 + Psyr_3372 0.88 +1.3
4,032,019 + Psyr_3372 0.88 -1.6
4,032,019 + Psyr_3372 0.88 -0.1
4,032,020 - Psyr_3372 0.88 +0.1
4,032,020 - Psyr_3372 0.88 -1.0
4,032,020 - Psyr_3372 0.88 +0.7
4,032,020 - Psyr_3372 0.88 +0.0
4,032,020 - Psyr_3372 0.88 +1.6
4,032,167 + -0.3
4,032,167 + +0.1
4,032,167 + +0.0
4,032,167 + -0.1
4,032,168 - +0.6
4,032,168 - +0.3
4,032,168 - +0.0
4,032,168 - +0.5
4,032,238 + Psyr_3373 0.12 -1.4
4,032,341 + Psyr_3373 0.29 -2.0
4,032,341 + Psyr_3373 0.29 +1.3
4,032,341 + Psyr_3373 0.29 -0.7
4,032,341 + Psyr_3373 0.29 -0.5
4,032,341 + Psyr_3373 0.29 -1.4
4,032,342 - Psyr_3373 0.29 +0.6
4,032,342 - Psyr_3373 0.29 +0.2
4,032,342 - Psyr_3373 0.29 -0.1
4,032,342 - Psyr_3373 0.29 +1.0
4,032,342 - Psyr_3373 0.29 +0.7

Or see this region's nucleotide sequence