Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3218

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3217 and Psyr_3218 are separated by 166 nucleotidesPsyr_3218 and Psyr_3219 are separated by 24 nucleotides Psyr_3217: Psyr_3217 - Protein of unknown function DUF6, at 3,853,334 to 3,854,221 _3217 Psyr_3218: Psyr_3218 - hypothetical protein, at 3,854,388 to 3,854,702 _3218 Psyr_3219: Psyr_3219 - Peptidase M24, at 3,854,727 to 3,856,535 _3219 Position (kb) 3854 3855Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3853.565 kb on + strand, within Psyr_3217at 3853.566 kb on - strand, within Psyr_3217at 3853.566 kb on - strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.601 kb on + strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.602 kb on - strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.603 kb on + strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.604 kb on - strand, within Psyr_3217at 3853.620 kb on + strand, within Psyr_3217at 3853.823 kb on + strand, within Psyr_3217at 3853.823 kb on + strand, within Psyr_3217at 3853.906 kb on - strand, within Psyr_3217at 3853.923 kb on + strand, within Psyr_3217at 3853.923 kb on + strand, within Psyr_3217at 3853.959 kb on + strand, within Psyr_3217at 3854.005 kb on + strand, within Psyr_3217at 3854.045 kb on - strand, within Psyr_3217at 3854.045 kb on - strand, within Psyr_3217at 3854.225 kb on + strandat 3854.226 kb on - strandat 3854.254 kb on - strandat 3854.284 kb on + strandat 3854.297 kb on + strandat 3854.377 kb on + strandat 3854.395 kb on - strandat 3854.417 kb on - strandat 3854.521 kb on - strand, within Psyr_3218at 3854.604 kb on + strand, within Psyr_3218at 3854.631 kb on + strand, within Psyr_3218at 3854.701 kb on - strandat 3854.701 kb on - strandat 3854.812 kb on + strandat 3854.813 kb on - strandat 3854.987 kb on - strand, within Psyr_3219at 3854.990 kb on + strand, within Psyr_3219at 3854.990 kb on + strand, within Psyr_3219at 3854.991 kb on - strand, within Psyr_3219at 3854.991 kb on - strand, within Psyr_3219at 3855.055 kb on + strand, within Psyr_3219at 3855.094 kb on + strand, within Psyr_3219at 3855.124 kb on + strand, within Psyr_3219at 3855.146 kb on + strand, within Psyr_3219at 3855.240 kb on - strand, within Psyr_3219at 3855.313 kb on + strand, within Psyr_3219at 3855.314 kb on - strand, within Psyr_3219at 3855.354 kb on + strand, within Psyr_3219at 3855.354 kb on + strand, within Psyr_3219at 3855.354 kb on + strand, within Psyr_3219at 3855.354 kb on + strand, within Psyr_3219at 3855.593 kb on + strand, within Psyr_3219at 3855.622 kb on - strand, within Psyr_3219at 3855.670 kb on + strand, within Psyr_3219

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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3,853,565 + Psyr_3217 0.26 -2.9
3,853,566 - Psyr_3217 0.26 -0.1
3,853,566 - Psyr_3217 0.26 +1.3
3,853,601 + Psyr_3217 0.30 +0.8
3,853,601 + Psyr_3217 0.30 +1.0
3,853,601 + Psyr_3217 0.30 +1.0
3,853,601 + Psyr_3217 0.30 -0.2
3,853,601 + Psyr_3217 0.30 -0.2
3,853,601 + Psyr_3217 0.30 -0.9
3,853,601 + Psyr_3217 0.30 +0.8
3,853,601 + Psyr_3217 0.30 +1.3
3,853,601 + Psyr_3217 0.30 -1.5
3,853,601 + Psyr_3217 0.30 +1.3
3,853,601 + Psyr_3217 0.30 -1.3
3,853,601 + Psyr_3217 0.30 -0.0
3,853,601 + Psyr_3217 0.30 -0.7
3,853,601 + Psyr_3217 0.30 +0.7
3,853,601 + Psyr_3217 0.30 -1.7
3,853,601 + Psyr_3217 0.30 +0.2
3,853,601 + Psyr_3217 0.30 +1.4
3,853,601 + Psyr_3217 0.30 -0.3
3,853,601 + Psyr_3217 0.30 +1.3
3,853,602 - Psyr_3217 0.30 -0.5
3,853,602 - Psyr_3217 0.30 -0.4
3,853,602 - Psyr_3217 0.30 +0.1
3,853,602 - Psyr_3217 0.30 -0.3
3,853,602 - Psyr_3217 0.30 -0.3
3,853,602 - Psyr_3217 0.30 +1.1
3,853,602 - Psyr_3217 0.30 +0.2
3,853,602 - Psyr_3217 0.30 -0.6
3,853,602 - Psyr_3217 0.30 -0.7
3,853,603 + Psyr_3217 0.30 +1.0
3,853,603 + Psyr_3217 0.30 +0.8
3,853,603 + Psyr_3217 0.30 +1.5
3,853,603 + Psyr_3217 0.30 +2.5
3,853,603 + Psyr_3217 0.30 +0.4
3,853,603 + Psyr_3217 0.30 -1.4
3,853,603 + Psyr_3217 0.30 +2.9
3,853,604 - Psyr_3217 0.30 +0.7
3,853,604 - Psyr_3217 0.30 -0.1
3,853,604 - Psyr_3217 0.30 +0.5
3,853,604 - Psyr_3217 0.30 +1.7
3,853,604 - Psyr_3217 0.30 -0.5
3,853,604 - Psyr_3217 0.30 -0.7
3,853,604 - Psyr_3217 0.30 -0.0
3,853,604 - Psyr_3217 0.30 -0.8
3,853,604 - Psyr_3217 0.30 +0.3
3,853,620 + Psyr_3217 0.32 -0.1
3,853,823 + Psyr_3217 0.55 -1.3
3,853,823 + Psyr_3217 0.55 -1.7
3,853,906 - Psyr_3217 0.64 -1.0
3,853,923 + Psyr_3217 0.66 -0.0
3,853,923 + Psyr_3217 0.66 -0.7
3,853,959 + Psyr_3217 0.70 +0.2
3,854,005 + Psyr_3217 0.76 +0.1
3,854,045 - Psyr_3217 0.80 -0.6
3,854,045 - Psyr_3217 0.80 -0.8
3,854,225 + -1.5
3,854,226 - +1.3
3,854,254 - +0.7
3,854,284 + +0.9
3,854,297 + +0.9
3,854,377 + -1.2
3,854,395 - -0.7
3,854,417 - -1.0
3,854,521 - Psyr_3218 0.42 -0.7
3,854,604 + Psyr_3218 0.69 -1.5
3,854,631 + Psyr_3218 0.77 +0.1
3,854,701 - +2.9
3,854,701 - -1.3
3,854,812 + -0.9
3,854,813 - -0.0
3,854,987 - Psyr_3219 0.14 -1.0
3,854,990 + Psyr_3219 0.15 -1.3
3,854,990 + Psyr_3219 0.15 -0.0
3,854,991 - Psyr_3219 0.15 +0.2
3,854,991 - Psyr_3219 0.15 +0.0
3,855,055 + Psyr_3219 0.18 -0.3
3,855,094 + Psyr_3219 0.20 +0.9
3,855,124 + Psyr_3219 0.22 -0.0
3,855,146 + Psyr_3219 0.23 +0.8
3,855,240 - Psyr_3219 0.28 +0.0
3,855,313 + Psyr_3219 0.32 -0.6
3,855,314 - Psyr_3219 0.32 +1.0
3,855,354 + Psyr_3219 0.35 -0.1
3,855,354 + Psyr_3219 0.35 -0.1
3,855,354 + Psyr_3219 0.35 +0.5
3,855,354 + Psyr_3219 0.35 -1.2
3,855,593 + Psyr_3219 0.48 -0.3
3,855,622 - Psyr_3219 0.49 -0.0
3,855,670 + Psyr_3219 0.52 +1.2

Or see this region's nucleotide sequence