Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3203

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3202 and Psyr_3203 overlap by 4 nucleotidesPsyr_3203 and Psyr_3204 are separated by 11 nucleotidesPsyr_3204 and Psyr_3205 are separated by 10 nucleotides Psyr_3202: Psyr_3202 - NADH dehydrogenase subunit G, at 3,832,652 to 3,835,369 _3202 Psyr_3203: Psyr_3203 - NADH dehydrogenase subunit H, at 3,835,366 to 3,836,373 _3203 Psyr_3204: Psyr_3204 - NADH dehydrogenase subunit I, at 3,836,385 to 3,836,933 _3204 Psyr_3205: Psyr_3205 - NADH dehydrogenase subunit J, at 3,836,944 to 3,837,453 _3205 Position (kb) 3835 3836 3837Strain fitness (log2 ratio) -1 0 1at 3835.158 kb on - strandat 3835.158 kb on - strandat 3835.745 kb on + strand, within Psyr_3203at 3836.093 kb on - strand, within Psyr_3203at 3836.396 kb on + strandat 3836.506 kb on - strand, within Psyr_3204at 3836.785 kb on - strand, within Psyr_3204at 3837.268 kb on + strand, within Psyr_3205

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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3,835,158 - -0.7
3,835,158 - +0.7
3,835,745 + Psyr_3203 0.38 -0.4
3,836,093 - Psyr_3203 0.72 +1.0
3,836,396 + -0.3
3,836,506 - Psyr_3204 0.22 -0.1
3,836,785 - Psyr_3204 0.73 -0.5
3,837,268 + Psyr_3205 0.64 -0.2

Or see this region's nucleotide sequence