Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2729

Experiment: KB with Aristolochic Acid 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2728 and Psyr_2729 are separated by 211 nucleotidesPsyr_2729 and Psyr_2730 are separated by 29 nucleotides Psyr_2728: Psyr_2728 - vanillin synthase / trans-feruloyl-CoA hydratase, at 3,311,551 to 3,312,381 _2728 Psyr_2729: Psyr_2729 - transcriptional regulator, MarR family, at 3,312,593 to 3,313,081 _2729 Psyr_2730: Psyr_2730 - outer membrane porin, at 3,313,111 to 3,314,433 _2730 Position (kb) 3312 3313 3314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3311.672 kb on + strand, within Psyr_2728at 3311.764 kb on - strand, within Psyr_2728at 3311.873 kb on + strand, within Psyr_2728at 3311.873 kb on + strand, within Psyr_2728at 3311.873 kb on + strand, within Psyr_2728at 3311.873 kb on + strand, within Psyr_2728at 3311.873 kb on + strand, within Psyr_2728at 3311.873 kb on + strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.874 kb on - strand, within Psyr_2728at 3311.876 kb on + strand, within Psyr_2728at 3311.876 kb on + strand, within Psyr_2728at 3311.877 kb on - strand, within Psyr_2728at 3312.069 kb on - strand, within Psyr_2728at 3312.076 kb on + strand, within Psyr_2728at 3312.159 kb on - strand, within Psyr_2728at 3312.327 kb on + strandat 3312.328 kb on - strandat 3312.328 kb on - strandat 3312.328 kb on - strandat 3312.371 kb on + strandat 3312.371 kb on + strandat 3312.371 kb on + strandat 3312.371 kb on + strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.423 kb on + strandat 3312.424 kb on - strandat 3312.424 kb on - strandat 3312.512 kb on + strandat 3312.512 kb on + strandat 3312.512 kb on + strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.521 kb on + strandat 3312.521 kb on + strandat 3312.521 kb on + strandat 3312.521 kb on + strandat 3312.521 kb on - strandat 3312.522 kb on - strandat 3312.525 kb on + strandat 3312.525 kb on + strandat 3312.526 kb on - strandat 3313.071 kb on - strandat 3313.071 kb on - strandat 3313.071 kb on - strandat 3313.130 kb on + strandat 3313.130 kb on + strandat 3313.130 kb on + strandat 3313.130 kb on + strandat 3313.131 kb on - strandat 3313.131 kb on - strandat 3313.131 kb on - strandat 3313.131 kb on - strandat 3313.196 kb on + strandat 3313.196 kb on + strandat 3313.197 kb on - strandat 3313.254 kb on - strand, within Psyr_2730at 3313.334 kb on + strand, within Psyr_2730at 3313.334 kb on + strand, within Psyr_2730at 3313.335 kb on - strand, within Psyr_2730at 3313.383 kb on - strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.392 kb on + strand, within Psyr_2730at 3313.392 kb on + strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.479 kb on - strand, within Psyr_2730at 3313.479 kb on - strand, within Psyr_2730at 3313.479 kb on - strand, within Psyr_2730at 3313.511 kb on + strand, within Psyr_2730at 3313.512 kb on - strand, within Psyr_2730at 3313.691 kb on + strand, within Psyr_2730at 3313.692 kb on - strand, within Psyr_2730at 3313.692 kb on - strand, within Psyr_2730at 3313.702 kb on + strand, within Psyr_2730at 3313.715 kb on + strand, within Psyr_2730at 3313.715 kb on + strand, within Psyr_2730at 3313.716 kb on - strand, within Psyr_2730at 3313.716 kb on - strand, within Psyr_2730at 3313.763 kb on + strand, within Psyr_2730at 3313.764 kb on - strand, within Psyr_2730at 3313.832 kb on + strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3314.045 kb on + strand, within Psyr_2730at 3314.046 kb on - strand, within Psyr_2730

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
remove
3,311,672 + Psyr_2728 0.15 -2.7
3,311,764 - Psyr_2728 0.26 -0.0
3,311,873 + Psyr_2728 0.39 -0.4
3,311,873 + Psyr_2728 0.39 +0.9
3,311,873 + Psyr_2728 0.39 -0.5
3,311,873 + Psyr_2728 0.39 +1.5
3,311,873 + Psyr_2728 0.39 -0.8
3,311,873 + Psyr_2728 0.39 +0.5
3,311,874 - Psyr_2728 0.39 +0.5
3,311,874 - Psyr_2728 0.39 +0.1
3,311,874 - Psyr_2728 0.39 +1.7
3,311,874 - Psyr_2728 0.39 -1.8
3,311,874 - Psyr_2728 0.39 -0.3
3,311,874 - Psyr_2728 0.39 +0.7
3,311,874 - Psyr_2728 0.39 -0.7
3,311,874 - Psyr_2728 0.39 +0.3
3,311,874 - Psyr_2728 0.39 -0.7
3,311,874 - Psyr_2728 0.39 +0.4
3,311,876 + Psyr_2728 0.39 -0.6
3,311,876 + Psyr_2728 0.39 +1.5
3,311,877 - Psyr_2728 0.39 -0.1
3,312,069 - Psyr_2728 0.62 -1.7
3,312,076 + Psyr_2728 0.63 +0.9
3,312,159 - Psyr_2728 0.73 +0.2
3,312,327 + -2.5
3,312,328 - +1.0
3,312,328 - +1.2
3,312,328 - +1.5
3,312,371 + +0.5
3,312,371 + -0.1
3,312,371 + -0.5
3,312,371 + -1.1
3,312,372 - +0.8
3,312,372 - -0.1
3,312,372 - -0.5
3,312,372 - +0.4
3,312,372 - +0.1
3,312,423 + -1.6
3,312,424 - +0.8
3,312,424 - +0.9
3,312,512 + +0.1
3,312,512 + +1.9
3,312,512 + +0.8
3,312,513 - +0.6
3,312,513 - +1.2
3,312,513 - -2.0
3,312,513 - +0.0
3,312,513 - -0.6
3,312,521 + +0.1
3,312,521 + -0.8
3,312,521 + +0.5
3,312,521 + -0.1
3,312,521 - -0.5
3,312,522 - -1.0
3,312,525 + +1.3
3,312,525 + +0.9
3,312,526 - +0.3
3,313,071 - -1.2
3,313,071 - -2.6
3,313,071 - -0.8
3,313,130 + +1.2
3,313,130 + -1.1
3,313,130 + -0.7
3,313,130 + -2.0
3,313,131 - +0.3
3,313,131 - +0.5
3,313,131 - -0.3
3,313,131 - -1.5
3,313,196 + -0.2
3,313,196 + -0.7
3,313,197 - -0.3
3,313,254 - Psyr_2730 0.11 +0.3
3,313,334 + Psyr_2730 0.17 -2.1
3,313,334 + Psyr_2730 0.17 +0.2
3,313,335 - Psyr_2730 0.17 +1.9
3,313,383 - Psyr_2730 0.21 -0.1
3,313,388 + Psyr_2730 0.21 -1.8
3,313,388 + Psyr_2730 0.21 +0.5
3,313,388 + Psyr_2730 0.21 -0.6
3,313,388 + Psyr_2730 0.21 -0.1
3,313,388 + Psyr_2730 0.21 +1.2
3,313,389 - Psyr_2730 0.21 -1.2
3,313,389 - Psyr_2730 0.21 -0.5
3,313,389 - Psyr_2730 0.21 -0.3
3,313,389 - Psyr_2730 0.21 +2.5
3,313,389 - Psyr_2730 0.21 -1.5
3,313,392 + Psyr_2730 0.21 -1.0
3,313,392 + Psyr_2730 0.21 -1.2
3,313,393 - Psyr_2730 0.21 +0.3
3,313,393 - Psyr_2730 0.21 +0.2
3,313,393 - Psyr_2730 0.21 -0.2
3,313,393 - Psyr_2730 0.21 +0.3
3,313,478 + Psyr_2730 0.28 -0.4
3,313,478 + Psyr_2730 0.28 -0.2
3,313,478 + Psyr_2730 0.28 -0.6
3,313,478 + Psyr_2730 0.28 +0.7
3,313,479 - Psyr_2730 0.28 -0.8
3,313,479 - Psyr_2730 0.28 +0.9
3,313,479 - Psyr_2730 0.28 -3.3
3,313,511 + Psyr_2730 0.30 -2.4
3,313,512 - Psyr_2730 0.30 -0.1
3,313,691 + Psyr_2730 0.44 -0.0
3,313,692 - Psyr_2730 0.44 -1.5
3,313,692 - Psyr_2730 0.44 +0.6
3,313,702 + Psyr_2730 0.45 +0.5
3,313,715 + Psyr_2730 0.46 -1.3
3,313,715 + Psyr_2730 0.46 -0.7
3,313,716 - Psyr_2730 0.46 +0.2
3,313,716 - Psyr_2730 0.46 +0.5
3,313,763 + Psyr_2730 0.49 +0.7
3,313,764 - Psyr_2730 0.49 -1.1
3,313,832 + Psyr_2730 0.54 -1.1
3,313,833 - Psyr_2730 0.55 -0.1
3,313,833 - Psyr_2730 0.55 -2.0
3,313,833 - Psyr_2730 0.55 +0.3
3,313,894 + Psyr_2730 0.59 +0.4
3,313,894 + Psyr_2730 0.59 +1.1
3,313,894 + Psyr_2730 0.59 +0.2
3,313,894 + Psyr_2730 0.59 -0.3
3,313,894 + Psyr_2730 0.59 +0.6
3,313,894 + Psyr_2730 0.59 -0.1
3,313,894 + Psyr_2730 0.59 -0.0
3,313,894 + Psyr_2730 0.59 -0.3
3,313,894 + Psyr_2730 0.59 -1.0
3,313,894 + Psyr_2730 0.59 -0.3
3,313,894 + Psyr_2730 0.59 +0.3
3,313,894 + Psyr_2730 0.59 +1.0
3,313,894 + Psyr_2730 0.59 -1.0
3,313,894 + Psyr_2730 0.59 +0.1
3,313,894 + Psyr_2730 0.59 -0.1
3,313,894 + Psyr_2730 0.59 +0.2
3,313,894 + Psyr_2730 0.59 -1.0
3,313,894 + Psyr_2730 0.59 +0.2
3,313,894 + Psyr_2730 0.59 +1.3
3,313,894 + Psyr_2730 0.59 -0.5
3,313,894 + Psyr_2730 0.59 +3.1
3,313,894 + Psyr_2730 0.59 +1.5
3,313,895 - Psyr_2730 0.59 -0.8
3,313,895 - Psyr_2730 0.59 +0.5
3,313,895 - Psyr_2730 0.59 +0.5
3,313,895 - Psyr_2730 0.59 +0.9
3,313,895 - Psyr_2730 0.59 -1.3
3,313,895 - Psyr_2730 0.59 -0.8
3,313,895 - Psyr_2730 0.59 -0.1
3,313,895 - Psyr_2730 0.59 -0.8
3,313,895 - Psyr_2730 0.59 -2.5
3,313,895 - Psyr_2730 0.59 -2.2
3,313,895 - Psyr_2730 0.59 -0.1
3,314,045 + Psyr_2730 0.71 +0.5
3,314,046 - Psyr_2730 0.71 -0.5

Or see this region's nucleotide sequence