Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2724

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2723 and Psyr_2724 are separated by 131 nucleotidesPsyr_2724 and Psyr_2725 are separated by 18 nucleotides Psyr_2723: Psyr_2723 - transcriptional regulator, LysR family, at 3,305,185 to 3,306,102 _2723 Psyr_2724: Psyr_2724 - conserved hypothetical protein, at 3,306,234 to 3,306,689 _2724 Psyr_2725: Psyr_2725 - Thiolase, at 3,306,708 to 3,307,970 _2725 Position (kb) 3306 3307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3305.313 kb on + strand, within Psyr_2723at 3305.314 kb on - strand, within Psyr_2723at 3305.395 kb on + strand, within Psyr_2723at 3305.462 kb on + strand, within Psyr_2723at 3305.483 kb on - strand, within Psyr_2723at 3305.483 kb on - strand, within Psyr_2723at 3305.483 kb on - strand, within Psyr_2723at 3305.652 kb on + strand, within Psyr_2723at 3305.656 kb on - strand, within Psyr_2723at 3305.656 kb on - strand, within Psyr_2723at 3305.761 kb on + strand, within Psyr_2723at 3305.761 kb on + strand, within Psyr_2723at 3305.761 kb on + strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.762 kb on - strand, within Psyr_2723at 3305.763 kb on + strand, within Psyr_2723at 3306.053 kb on - strandat 3306.117 kb on - strandat 3306.155 kb on + strandat 3306.155 kb on + strandat 3306.155 kb on + strandat 3306.575 kb on + strand, within Psyr_2724at 3306.575 kb on + strand, within Psyr_2724at 3306.709 kb on + strandat 3306.727 kb on + strandat 3306.727 kb on + strandat 3306.728 kb on - strandat 3306.728 kb on - strandat 3306.728 kb on - strandat 3306.793 kb on + strandat 3306.843 kb on + strand, within Psyr_2725at 3306.843 kb on + strand, within Psyr_2725at 3306.843 kb on + strand, within Psyr_2725at 3306.844 kb on - strand, within Psyr_2725at 3306.931 kb on - strand, within Psyr_2725at 3307.175 kb on + strand, within Psyr_2725at 3307.175 kb on + strand, within Psyr_2725at 3307.175 kb on + strand, within Psyr_2725at 3307.176 kb on - strand, within Psyr_2725at 3307.298 kb on + strand, within Psyr_2725at 3307.299 kb on - strand, within Psyr_2725at 3307.299 kb on - strand, within Psyr_2725at 3307.499 kb on - strand, within Psyr_2725at 3307.565 kb on + strand, within Psyr_2725at 3307.567 kb on + strand, within Psyr_2725at 3307.568 kb on - strand, within Psyr_2725at 3307.682 kb on + strand, within Psyr_2725at 3307.682 kb on + strand, within Psyr_2725at 3307.683 kb on - strand, within Psyr_2725at 3307.683 kb on - strand, within Psyr_2725

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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3,305,313 + Psyr_2723 0.14 -0.8
3,305,314 - Psyr_2723 0.14 -0.5
3,305,395 + Psyr_2723 0.23 +0.5
3,305,462 + Psyr_2723 0.30 +0.7
3,305,483 - Psyr_2723 0.32 -0.1
3,305,483 - Psyr_2723 0.32 -0.2
3,305,483 - Psyr_2723 0.32 +0.3
3,305,652 + Psyr_2723 0.51 +1.5
3,305,656 - Psyr_2723 0.51 +0.5
3,305,656 - Psyr_2723 0.51 +2.1
3,305,761 + Psyr_2723 0.63 -1.0
3,305,761 + Psyr_2723 0.63 -0.8
3,305,761 + Psyr_2723 0.63 -2.8
3,305,762 - Psyr_2723 0.63 +0.5
3,305,762 - Psyr_2723 0.63 -0.4
3,305,762 - Psyr_2723 0.63 -0.7
3,305,762 - Psyr_2723 0.63 -0.0
3,305,762 - Psyr_2723 0.63 +0.3
3,305,763 + Psyr_2723 0.63 +0.9
3,306,053 - -1.1
3,306,117 - +0.8
3,306,155 + +0.9
3,306,155 + -0.4
3,306,155 + -0.7
3,306,575 + Psyr_2724 0.75 +0.1
3,306,575 + Psyr_2724 0.75 +1.0
3,306,709 + +1.0
3,306,727 + +0.0
3,306,727 + +1.1
3,306,728 - -0.8
3,306,728 - -0.8
3,306,728 - -1.3
3,306,793 + +0.7
3,306,843 + Psyr_2725 0.11 -0.4
3,306,843 + Psyr_2725 0.11 +0.7
3,306,843 + Psyr_2725 0.11 -0.7
3,306,844 - Psyr_2725 0.11 +0.0
3,306,931 - Psyr_2725 0.18 -0.7
3,307,175 + Psyr_2725 0.37 +1.4
3,307,175 + Psyr_2725 0.37 -0.5
3,307,175 + Psyr_2725 0.37 +0.0
3,307,176 - Psyr_2725 0.37 -0.6
3,307,298 + Psyr_2725 0.47 +0.1
3,307,299 - Psyr_2725 0.47 -1.0
3,307,299 - Psyr_2725 0.47 -0.2
3,307,499 - Psyr_2725 0.63 +1.7
3,307,565 + Psyr_2725 0.68 +2.6
3,307,567 + Psyr_2725 0.68 +0.3
3,307,568 - Psyr_2725 0.68 +1.1
3,307,682 + Psyr_2725 0.77 -0.2
3,307,682 + Psyr_2725 0.77 +0.2
3,307,683 - Psyr_2725 0.77 -0.8
3,307,683 - Psyr_2725 0.77 -0.2

Or see this region's nucleotide sequence