Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2659

Experiment: KB with Aristolochic Acid 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Aristolochic Acid 10 mM
3,229,089	+		Psyr_2658	0.68	-1.7
3,229,121	+		Psyr_2658	0.71	+0.1
3,229,136	+		Psyr_2658	0.72	-0.7
3,229,136	+		Psyr_2658	0.72	-0.9
3,229,136	+		Psyr_2658	0.72	+0.7
3,229,137	-		Psyr_2658	0.72	+0.5
3,229,137	-		Psyr_2658	0.72	-0.3
3,229,137	-		Psyr_2658	0.72	+0.5
3,229,137	-		Psyr_2658	0.72	+0.9
3,229,137	-		Psyr_2658	0.72	-1.0
3,229,137	-		Psyr_2658	0.72	-0.0
3,229,144	+		Psyr_2658	0.73	-1.3
3,229,144	+		Psyr_2658	0.73	-0.5
3,229,144	+		Psyr_2658	0.73	-0.6
3,229,144	+		Psyr_2658	0.73	-0.5
3,229,144	+		Psyr_2658	0.73	-0.1
3,229,144	+		Psyr_2658	0.73	-0.9
3,229,145	-		Psyr_2658	0.73	+0.2
3,229,145	-		Psyr_2658	0.73	+0.6
3,229,145	-		Psyr_2658	0.73	-0.1
3,229,145	-		Psyr_2658	0.73	-0.1
3,229,145	-		Psyr_2658	0.73	+1.0
3,229,145	-		Psyr_2658	0.73	+0.4
3,229,145	-		Psyr_2658	0.73	+0.3
3,229,145	-		Psyr_2658	0.73	-0.5
3,229,145	-		Psyr_2658	0.73	-0.6
3,229,212	+		Psyr_2658	0.79	-2.3
3,229,213	-		Psyr_2658	0.79	-1.1
3,229,213	-		Psyr_2658	0.79	+0.6
3,229,213	-		Psyr_2658	0.79	+0.4
3,229,213	-		Psyr_2658	0.79	-0.2
3,229,213	-		Psyr_2658	0.79	-0.5
3,229,230	+		Psyr_2658	0.80	-1.3
3,229,231	-		Psyr_2658	0.81	+0.1
3,229,231	-		Psyr_2658	0.81	-0.4
3,229,236	+		Psyr_2658	0.81	-2.5
3,229,236	+		Psyr_2658	0.81	-0.5
3,229,236	+		Psyr_2658	0.81	-0.3
3,229,237	-		Psyr_2658	0.81	-0.9
3,229,237	-		Psyr_2658	0.81	-1.0
3,229,237	-		Psyr_2658	0.81	-1.4
3,229,237	-		Psyr_2658	0.81	+0.7
3,229,354	+				-1.5
3,229,354	+				-0.5
3,229,354	+				+0.1
3,229,355	-				-1.1
3,229,373	+				-0.1
3,229,373	+				+1.5
3,229,374	-				+0.5
3,229,374	-				-1.3
3,229,375	+				-1.1
3,229,411	+				-1.1
3,229,411	+				-0.7
3,229,411	+				-0.5
3,229,411	+				-1.9
3,229,412	-				+0.7
3,229,412	-				+2.5
3,229,482	+				-0.2
3,229,483	-				-1.4
3,229,483	-				+0.6
3,229,483	-				+0.1
3,229,483	-				+0.1
3,229,483	-				+0.0
3,229,483	-				+0.5
3,229,585	+				-0.8
3,229,586	-				-0.1
3,229,610	+				+0.5
3,229,610	+				+0.1
3,229,611	-				+1.1
3,229,611	-				-0.7
3,229,611	-				-0.1
3,229,611	-				-1.0
3,229,611	-				-1.2
3,229,631	-				-1.5
3,229,642	+				-0.1
3,229,651	-				-1.5
3,229,702	-				-0.9
3,229,702	-				-1.1
3,229,790	+				-1.4
3,229,791	-				-2.0
3,229,792	+				+0.5
3,229,792	+				-2.2
3,229,792	+				+3.5
3,229,792	+				-0.2
3,229,792	+				-0.2
3,229,792	+				-0.5
3,229,792	+				+0.2
3,229,792	+				-1.2
3,229,793	-				+0.5
3,229,793	-				+1.5
3,229,793	-				-2.2
3,229,793	-				+1.5
3,229,793	-				+1.5
3,229,804	+				-0.9
3,229,867	+				-3.0
3,229,867	+				-2.0
3,229,868	-				-1.0
3,229,869	+				-0.8
3,229,896	+				+0.4
3,229,897	-				+0.5
3,229,918	+				+1.1
3,229,918	+				-0.1
3,229,918	+				-0.1
3,229,918	+				-1.5
3,229,918	+				-1.3
3,229,919	-				+0.5
3,229,919	-				-0.8
3,229,919	-				+0.1
3,229,922	+				-1.1
3,229,922	+				-2.6
3,229,923	-				-2.6
3,229,951	+				-0.1
3,229,952	-				+0.3
3,230,017	-				-0.9
3,230,127	+				+2.1
3,230,127	+				-1.1
3,230,246	+		Psyr_2659	0.17	-0.1
3,230,246	+		Psyr_2659	0.17	-2.3
3,230,246	+		Psyr_2659	0.17	+1.5
3,230,247	-		Psyr_2659	0.17	-2.1
3,230,247	-		Psyr_2659	0.17	+0.8
3,230,247	-		Psyr_2659	0.17	-0.9
3,230,247	-		Psyr_2659	0.17	-0.2
3,230,250	+		Psyr_2659	0.17	-1.1
3,230,251	-		Psyr_2659	0.17	-0.6
3,230,263	+		Psyr_2659	0.18	-0.9
3,230,263	+		Psyr_2659	0.18	-0.4
3,230,342	+		Psyr_2659	0.24	+1.5
3,230,342	+		Psyr_2659	0.24	-0.5
3,230,342	+		Psyr_2659	0.24	+1.5
3,230,342	+		Psyr_2659	0.24	-1.1
3,230,342	+		Psyr_2659	0.24	-0.1
3,230,343	-		Psyr_2659	0.24	-0.1
3,230,361	+		Psyr_2659	0.26	-1.5
3,230,362	-		Psyr_2659	0.26	+0.5
3,230,379	+		Psyr_2659	0.27	-0.5
3,230,379	+		Psyr_2659	0.27	+0.5
3,230,379	+		Psyr_2659	0.27	+0.3
3,230,379	+		Psyr_2659	0.27	-1.0
3,230,380	-		Psyr_2659	0.27	-0.4
3,230,382	+		Psyr_2659	0.28	-0.7
3,230,383	-		Psyr_2659	0.28	+0.1
3,230,450	+		Psyr_2659	0.33	-2.0
3,230,451	-		Psyr_2659	0.33	-2.0
3,230,457	-		Psyr_2659	0.33	-0.6
3,230,476	+		Psyr_2659	0.35	+1.7
3,230,476	+		Psyr_2659	0.35	-1.1
3,230,476	+		Psyr_2659	0.35	-1.7
3,230,480	+		Psyr_2659	0.35	-1.3
3,230,480	+		Psyr_2659	0.35	-0.9
3,230,501	+		Psyr_2659	0.37	-0.6
3,230,501	+		Psyr_2659	0.37	+0.5
3,230,501	+		Psyr_2659	0.37	-0.5
3,230,501	+		Psyr_2659	0.37	-0.2
3,230,501	+		Psyr_2659	0.37	-0.5
3,230,501	+		Psyr_2659	0.37	+1.5
3,230,502	-		Psyr_2659	0.37	-2.0
3,230,502	-		Psyr_2659	0.37	-0.5
3,230,502	-		Psyr_2659	0.37	-0.9
3,230,505	+		Psyr_2659	0.37	-0.5
3,230,505	+		Psyr_2659	0.37	-1.5
3,230,505	+		Psyr_2659	0.37	+0.9
3,230,505	+		Psyr_2659	0.37	-1.1
3,230,505	+		Psyr_2659	0.37	-1.1
3,230,506	-		Psyr_2659	0.37	+1.5
3,230,506	-		Psyr_2659	0.37	-2.2
3,230,506	-		Psyr_2659	0.37	-0.5
3,230,506	-		Psyr_2659	0.37	-1.4
3,230,506	-		Psyr_2659	0.37	+1.9
3,230,506	-		Psyr_2659	0.37	+0.5
3,230,509	+				-1.3
3,230,547	-		Psyr_2659	0.40	+0.2
3,230,561	+		Psyr_2659	0.42	-0.5
3,230,561	+		Psyr_2659	0.42	+1.5
3,230,561	+		Psyr_2659	0.42	-1.4
3,230,561	+		Psyr_2659	0.42	-0.9
3,230,561	+		Psyr_2659	0.42	+1.5
3,230,562	-		Psyr_2659	0.42	+0.5
3,230,562	-		Psyr_2659	0.42	+2.5
3,230,564	+		Psyr_2659	0.42	-0.1
3,230,575	+		Psyr_2659	0.43	-0.3
3,230,575	+		Psyr_2659	0.43	-1.1
3,230,575	+		Psyr_2659	0.43	+0.1
3,230,575	+		Psyr_2659	0.43	-0.1
3,230,576	-		Psyr_2659	0.43	-1.1
3,230,576	-		Psyr_2659	0.43	-1.6
3,230,576	-		Psyr_2659	0.43	+1.5
3,230,576	-		Psyr_2659	0.43	+1.5
3,230,576	-		Psyr_2659	0.43	-0.1
3,230,576	-		Psyr_2659	0.43	+1.1
3,230,576	-		Psyr_2659	0.43	-0.5
3,230,576	-		Psyr_2659	0.43	-1.4
3,230,645	-		Psyr_2659	0.48	+0.7
3,230,645	-		Psyr_2659	0.48	-0.9
3,230,681	+		Psyr_2659	0.51	+0.9
3,230,682	-		Psyr_2659	0.51	-1.3
3,230,683	+		Psyr_2659	0.51	+0.1
3,230,683	+		Psyr_2659	0.51	+1.5
3,230,683	+				+1.5
3,230,683	+		Psyr_2659	0.51	-1.2
3,230,683	+		Psyr_2659	0.51	-1.3
3,230,683	+				+0.5
3,230,683	+		Psyr_2659	0.51	-2.0
3,230,683	+		Psyr_2659	0.51	-0.1
3,230,684	-		Psyr_2659	0.51	-1.8
3,230,684	-		Psyr_2659	0.51	-0.5
3,230,684	-		Psyr_2659	0.51	-2.0
3,230,684	-		Psyr_2659	0.51	+0.9
3,230,684	-		Psyr_2659	0.51	+1.5
3,230,745	+		Psyr_2659	0.56	-0.1
3,230,766	+		Psyr_2659	0.58	-0.9
3,230,766	+		Psyr_2659	0.58	-0.4
3,230,766	+		Psyr_2659	0.58	+0.5
3,230,766	+		Psyr_2659	0.58	+1.0
3,230,766	+		Psyr_2659	0.58	+1.3
3,230,766	+		Psyr_2659	0.58	-0.1
3,230,766	+		Psyr_2659	0.58	+0.9
3,230,766	+		Psyr_2659	0.58	+0.2
3,230,767	-		Psyr_2659	0.58	+0.3
3,230,767	-		Psyr_2659	0.58	-1.0
3,230,767	-		Psyr_2659	0.58	-0.1
3,230,767	-		Psyr_2659	0.58	-1.1
3,230,767	-		Psyr_2659	0.58	+0.3
3,230,811	+		Psyr_2659	0.61	-1.3
3,230,973	-		Psyr_2659	0.74	+0.5
3,231,068	-		Psyr_2659	0.81	+0.0
3,231,086	+		Psyr_2659	0.83	+0.1
3,231,087	-		Psyr_2659	0.83	-1.3
3,231,097	+		Psyr_2659	0.83	-0.6
3,231,097	+		Psyr_2659	0.83	-0.9
3,231,097	+		Psyr_2659	0.83	-1.3
3,231,122	+		Psyr_2659	0.85	-1.1
3,231,122	+		Psyr_2659	0.85	-1.1
3,231,165	+		Psyr_2659	0.89	+0.5
3,231,166	-		Psyr_2659	0.89	-1.1
3,231,286	+				-2.2
3,231,287	-				-1.1
3,231,317	-				-2.7
3,231,317	-				-1.4
3,231,328	+				-0.5
3,231,328	+				-0.1
3,231,404	+				-1.5
3,231,404	+				-2.6
3,231,405	-				+0.1
3,231,408	+				+0.9
3,231,408	+				+1.5
3,231,408	+				+0.5
3,231,408	+				+0.6
3,231,408	+				-0.9
3,231,409	-				+0.4
3,231,409	-				-0.0
3,231,409	-				+0.5
3,231,428	+				+0.5
3,231,429	-				+1.2
3,231,463	-				-0.7
3,231,463	-				+0.2
3,231,509	+		Psyr_2660	0.17	-0.5
3,231,510	-		Psyr_2660	0.17	+0.7
3,231,510	-		Psyr_2660	0.17	+0.9
3,231,564	-		Psyr_2660	0.37	-0.1
3,231,564	-		Psyr_2660	0.37	-1.5
3,231,639	+		Psyr_2660	0.63	+2.5
3,231,640	-		Psyr_2660	0.63	-0.1
3,231,648	+		Psyr_2660	0.66	-2.0
3,231,648	+		Psyr_2660	0.66	-0.9
3,231,648	+		Psyr_2660	0.66	+0.5
3,231,648	+		Psyr_2660	0.66	-0.9
3,231,648	+				+1.5
3,231,648	+		Psyr_2660	0.66	+0.0
3,231,648	+		Psyr_2660	0.66	-0.9
3,231,648	+		Psyr_2660	0.66	+0.5
3,231,648	+		Psyr_2660	0.66	-0.5
3,231,648	+		Psyr_2660	0.66	-0.4
3,231,648	+		Psyr_2660	0.66	+0.1
3,231,648	+		Psyr_2660	0.66	-1.1
3,231,648	+		Psyr_2660	0.66	-1.1
3,231,648	+		Psyr_2660	0.66	-0.3
3,231,648	+		Psyr_2660	0.66	+1.5
3,231,648	+		Psyr_2660	0.66	-2.1
3,231,648	+		Psyr_2660	0.66	-1.3
3,231,649	-		Psyr_2660	0.67	+0.2
3,231,649	-		Psyr_2660	0.67	-0.6
3,231,649	-		Psyr_2660	0.67	-1.6
3,231,649	-		Psyr_2660	0.67	-0.9
3,231,649	-		Psyr_2660	0.67	-0.2
3,231,649	-		Psyr_2660	0.67	+0.2
3,231,649	-		Psyr_2660	0.67	-1.3
3,231,649	-		Psyr_2660	0.67	+0.1
3,231,649	-		Psyr_2660	0.67	-0.1
3,231,649	-		Psyr_2660	0.67	-0.2
3,231,649	-		Psyr_2660	0.67	-0.2
3,231,649	-		Psyr_2660	0.67	-0.1
3,231,680	+		Psyr_2660	0.78	+0.1
3,231,681	-		Psyr_2660	0.78	-1.7
3,231,681	-		Psyr_2660	0.78	-1.8
3,231,718	+				-0.3
3,231,719	-				-1.7
3,231,735	-				-0.2
3,231,735	-				+0.2
3,231,833	+				-0.1
3,231,849	+				+0.1
3,231,850	-				-1.9
3,231,877	+				-0.1
3,231,878	-				-0.9
3,231,878	-				+0.5
3,231,911	+				-0.4
3,231,911	+				+1.1
3,231,911	+				-0.5
3,231,911	+				-2.0
3,231,912	-				+0.5
3,231,912	-				+0.2
3,231,912	-				+0.6
3,231,912	-				-0.5
3,231,918	+				-1.0
3,231,942	+		Psyr_2661	0.10	+1.5
3,232,022	-		Psyr_2661	0.17	-1.8
3,232,109	-		Psyr_2661	0.26	-2.4
3,232,192	+		Psyr_2661	0.33	+0.7
3,232,193	-		Psyr_2661	0.33	-1.2
3,232,270	+		Psyr_2661	0.40	-1.2
3,232,270	+		Psyr_2661	0.40	-0.1
3,232,270	+		Psyr_2661	0.40	-1.0
3,232,270	+		Psyr_2661	0.40	-0.3
3,232,271	-		Psyr_2661	0.40	-1.5
3,232,271	-		Psyr_2661	0.40	+0.2
3,232,271	-		Psyr_2661	0.40	+0.9
3,232,271	-		Psyr_2661	0.40	+0.7
3,232,271	-		Psyr_2661	0.40	+1.1
3,232,303	+		Psyr_2661	0.43	-0.7
3,232,303	+		Psyr_2661	0.43	+0.0
3,232,304	-		Psyr_2661	0.43	-2.2