Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2645

Experiment: KB with Aristolochic Acid 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Aristolochic Acid 10 mM
3,214,100	-		Psyr_2644	0.71	-1.7
3,214,100	-		Psyr_2644	0.71	-1.1
3,214,117	+		Psyr_2644	0.72	-1.1
3,214,117	+		Psyr_2644	0.72	-1.2
3,214,117	+		Psyr_2644	0.72	-2.0
3,214,117	+		Psyr_2644	0.72	+0.5
3,214,117	+		Psyr_2644	0.72	-1.1
3,214,117	+		Psyr_2644	0.72	-1.1
3,214,118	-		Psyr_2644	0.72	-0.9
3,214,118	-		Psyr_2644	0.72	+1.5
3,214,118	-		Psyr_2644	0.72	+0.5
3,214,118	-		Psyr_2644	0.72	-0.1
3,214,118	-		Psyr_2644	0.72	+0.1
3,214,118	-		Psyr_2644	0.72	+0.0
3,214,118	-		Psyr_2644	0.72	+1.5
3,214,121	+		Psyr_2644	0.72	-0.3
3,214,121	+		Psyr_2644	0.72	+0.5
3,214,121	+		Psyr_2644	0.72	-0.9
3,214,121	+		Psyr_2644	0.72	-0.5
3,214,121	+		Psyr_2644	0.72	-0.9
3,214,121	+		Psyr_2644	0.72	-1.3
3,214,121	+		Psyr_2644	0.72	-1.1
3,214,121	+		Psyr_2644	0.72	+1.5
3,214,122	-		Psyr_2644	0.72	-0.1
3,214,122	-				+0.5
3,214,122	-		Psyr_2644	0.72	-0.1
3,214,122	-		Psyr_2644	0.72	-2.4
3,214,122	-		Psyr_2644	0.72	+1.5
3,214,122	-		Psyr_2644	0.72	-0.2
3,214,122	-		Psyr_2644	0.72	-0.9
3,214,188	+		Psyr_2644	0.76	-1.5
3,214,188	+		Psyr_2644	0.76	-0.5
3,214,189	-		Psyr_2644	0.76	-0.9
3,214,189	-		Psyr_2644	0.76	+1.5
3,214,189	-		Psyr_2644	0.76	-1.9
3,214,189	-		Psyr_2644	0.76	-0.1
3,214,189	-		Psyr_2644	0.76	+2.5
3,214,239	+		Psyr_2644	0.78	+0.8
3,214,240	-		Psyr_2644	0.78	-1.5
3,214,292	+		Psyr_2644	0.81	-2.1
3,214,309	+		Psyr_2644	0.82	-1.3
3,214,338	-		Psyr_2644	0.83	-0.9
3,214,338	-		Psyr_2644	0.83	+0.5
3,214,430	+		Psyr_2644	0.88	+0.0
3,214,430	+		Psyr_2644	0.88	+0.9
3,214,430	+		Psyr_2644	0.88	+1.5
3,214,430	+		Psyr_2644	0.88	-0.8
3,214,430	+		Psyr_2644	0.88	+0.6
3,214,430	+		Psyr_2644	0.88	+0.2
3,214,430	+		Psyr_2644	0.88	+0.6
3,214,431	-		Psyr_2644	0.88	-1.9
3,214,431	-		Psyr_2644	0.88	+0.9
3,214,431	-		Psyr_2644	0.88	-0.5
3,214,431	-		Psyr_2644	0.88	-2.9
3,214,443	+		Psyr_2644	0.89	+1.7
3,214,443	+		Psyr_2644	0.89	-0.5
3,214,474	-				-0.9
3,214,514	+				-0.4
3,214,514	+				+1.1
3,214,515	-				-0.3
3,214,516	+				+1.5
3,214,516	+				+0.3
3,214,516	+				-0.9
3,214,516	+				+0.2
3,214,516	+				+0.9
3,214,516	+				+0.1
3,214,516	+				+0.6
3,214,516	+				-0.0
3,214,516	+				+1.2
3,214,516	+				+0.9
3,214,516	+				+0.1
3,214,516	+				+0.5
3,214,516	+				-1.4
3,214,517	-				+0.1
3,214,517	-				-0.8
3,214,517	-				+1.2
3,214,517	-				+1.5
3,214,517	-				-0.2
3,214,517	-				-2.8
3,214,517	-				-1.8
3,214,520	+				+1.1
3,214,520	+				+0.4
3,214,520	+				+1.1
3,214,520	+				+0.2
3,214,520	+				+0.2
3,214,520	+				+0.7
3,214,520	+				+1.1
3,214,520	+				+0.2
3,214,520	+				+0.5
3,214,521	-				-1.1
3,214,521	-				-0.9
3,214,521	-				-0.1
3,214,521	-				-1.7
3,214,521	-				+0.1
3,214,521	-				-0.5
3,214,521	-				-1.1
3,214,524	+				-0.1
3,214,524	+				+0.4
3,214,593	+				-0.2
3,214,593	+				+0.1
3,214,593	+				-1.0
3,214,716	+				+0.7
3,214,729	-				-0.1
3,214,729	-				-1.3
3,214,735	+				-1.5
3,214,736	-				-0.5
3,214,736	-				+0.3
3,214,736	-				-0.5
3,214,736	-				-2.4
3,214,736	-				-0.5
3,214,764	-				+0.3
3,214,778	+				-0.3
3,214,778	+				-1.1
3,214,778	+				-1.9
3,214,778	+				-1.1
3,214,778	+				+0.2
3,214,779	-				+0.9
3,214,779	-				-1.1
3,214,779	-				-2.0
3,214,779	-				-2.0
3,214,779	-				-0.5
3,214,779	-				+1.2
3,214,779	-				+0.6
3,214,779	-				-0.9
3,214,779	-				-1.1
3,214,779	-				-0.9
3,214,779	-				-0.1
3,214,787	+				+0.5
3,214,788	-				-0.6
3,214,788	-				-2.3
3,214,788	-				-1.3
3,214,864	+				+1.5
3,214,864	+				+0.8
3,214,865	-				-1.5
3,214,953	+				-0.9
3,214,954	-				-1.7
3,214,988	+				-0.5
3,214,988	+				-0.5
3,214,988	+				-0.5
3,214,988	+				+0.5
3,214,989	-				+0.5
3,214,989	-				-0.3
3,215,001	-				-2.1
3,215,084	-				+0.5
3,215,084	-				-2.5
3,215,095	-				+1.5
3,215,095	-				-1.5
3,215,215	+		Psyr_2645	0.35	-0.9
3,215,240	-		Psyr_2645	0.42	-2.1
3,215,240	-		Psyr_2645	0.42	+0.5
3,215,240	-		Psyr_2645	0.42	-0.4
3,215,240	-		Psyr_2645	0.42	-1.9
3,215,240	-		Psyr_2645	0.42	+0.5
3,215,287	+		Psyr_2645	0.54	-0.7
3,215,287	+		Psyr_2645	0.54	-1.1
3,215,288	-		Psyr_2645	0.54	+0.5
3,215,288	-		Psyr_2645	0.54	-1.1
3,215,288	-		Psyr_2645	0.54	-0.5
3,215,288	-		Psyr_2645	0.54	-1.3
3,215,288	-		Psyr_2645	0.54	-0.1
3,215,288	-		Psyr_2645	0.54	-0.3
3,215,399	+		Psyr_2645	0.84	+1.5
3,215,399	+		Psyr_2645	0.84	+0.3
3,215,405	+		Psyr_2645	0.85	-1.4
3,215,405	+		Psyr_2645	0.85	-1.3
3,215,405	+		Psyr_2645	0.85	-1.0
3,215,405	+		Psyr_2645	0.85	-1.7
3,215,406	-		Psyr_2645	0.86	+0.1
3,215,646	+				+0.7
3,215,646	+				-1.1
3,215,646	+				+1.5
3,215,646	+				+0.8
3,215,646	+				+0.4
3,215,646	+				+0.1
3,215,646	+				-1.3
3,215,646	+				-0.7
3,215,646	+				-0.1
3,215,646	+				-0.1
3,215,646	+				-0.0
3,215,646	+				-0.5
3,215,646	+				-1.5
3,215,646	+				-0.7
3,215,647	-				+0.7
3,215,647	-				+2.8
3,215,647	-				-0.2
3,215,647	-				-0.9
3,215,647	-				+0.6
3,215,732	-				+0.6
3,215,746	-				+1.0
3,215,786	-				-0.9
3,216,027	+				-0.8
3,216,027	+				-0.1
3,216,027	+				-0.4
3,216,028	-				+2.1
3,216,047	+				+0.9
3,216,047	+				-0.2
3,216,047	+				+1.5
3,216,048	-				-1.5
3,216,048	-				-2.7
3,216,055	+				+2.3
3,216,164	+				-0.5
3,216,165	-				-1.9
3,216,165	-				-0.2
3,216,165	-				-0.9
3,216,165	-				-1.3
3,216,165	-				-2.0
3,216,165	-				-1.3
3,216,165	-				+0.5
3,216,165	-				-0.1
3,216,170	+				+0.4
3,216,171	-				-0.9
3,216,171	-				+1.5
3,216,171	-				+0.5
3,216,257	+				+0.5
3,216,257	+				-0.6
3,216,258	-				+0.1
3,216,328	-		Psyr_2646	0.11	-0.1