Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2319 and Psyr_2320 are separated by 827 nucleotides Psyr_2320 and Psyr_2321 are separated by 5 nucleotides
Psyr_2319: Psyr_2319 - CDS, at 2,694,124 to 2,694,453
_2319
Psyr_2320: Psyr_2320 - YD repeat protein, at 2,695,281 to 2,696,807
_2320
Psyr_2321: Psyr_2321 - YD repeat protein, at 2,696,813 to 2,698,315
_2321
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2694.446 kb on + strand at 2694.446 kb on + strand at 2694.446 kb on + strand at 2694.447 kb on - strand at 2694.467 kb on + strand at 2694.467 kb on + strand at 2694.468 kb on - strand at 2694.468 kb on - strand at 2694.468 kb on - strand at 2694.468 kb on - strand at 2694.468 kb on - strand at 2694.567 kb on - strand at 2694.570 kb on - strand at 2694.570 kb on - strand at 2694.570 kb on - strand at 2694.597 kb on + strand at 2694.608 kb on + strand at 2694.622 kb on - strand at 2694.624 kb on + strand at 2694.624 kb on + strand at 2694.624 kb on + strand at 2694.625 kb on - strand at 2694.713 kb on - strand at 2694.740 kb on + strand at 2694.741 kb on - strand at 2694.744 kb on + strand at 2694.959 kb on + strand at 2694.959 kb on + strand at 2694.959 kb on + strand at 2694.959 kb on + strand at 2694.960 kb on - strand at 2694.960 kb on - strand at 2694.960 kb on - strand at 2694.960 kb on - strand at 2694.960 kb on - strand at 2694.960 kb on - strand at 2694.963 kb on + strand at 2694.964 kb on - strand at 2695.031 kb on - strand at 2695.031 kb on - strand at 2695.144 kb on - strand at 2695.144 kb on - strand at 2695.144 kb on - strand at 2695.144 kb on - strand at 2695.163 kb on + strand at 2695.164 kb on - strand at 2695.164 kb on - strand at 2695.165 kb on + strand at 2695.313 kb on + strand at 2695.314 kb on - strand at 2695.392 kb on + strand at 2695.392 kb on + strand at 2695.392 kb on + strand at 2695.392 kb on + strand at 2695.393 kb on - strand at 2695.393 kb on - strand at 2695.393 kb on - strand at 2695.393 kb on - strand at 2695.395 kb on - strand at 2695.398 kb on + strand at 2695.399 kb on - strand at 2695.470 kb on + strand, within Psyr_2320 at 2695.534 kb on - strand, within Psyr_2320 at 2695.597 kb on + strand, within Psyr_2320 at 2695.613 kb on + strand, within Psyr_2320 at 2695.614 kb on - strand, within Psyr_2320 at 2695.614 kb on - strand, within Psyr_2320 at 2695.614 kb on - strand, within Psyr_2320 at 2695.712 kb on + strand, within Psyr_2320 at 2695.743 kb on + strand at 2695.823 kb on - strand, within Psyr_2320 at 2695.928 kb on + strand, within Psyr_2320 at 2695.934 kb on + strand, within Psyr_2320 at 2695.935 kb on - strand, within Psyr_2320 at 2695.951 kb on + strand, within Psyr_2320 at 2695.983 kb on - strand, within Psyr_2320 at 2696.196 kb on + strand, within Psyr_2320 at 2696.196 kb on + strand, within Psyr_2320 at 2696.266 kb on - strand, within Psyr_2320 at 2696.336 kb on + strand, within Psyr_2320 at 2696.347 kb on - strand, within Psyr_2320 at 2696.433 kb on - strand, within Psyr_2320 at 2696.466 kb on + strand, within Psyr_2320 at 2696.467 kb on - strand, within Psyr_2320 at 2696.554 kb on - strand, within Psyr_2320 at 2696.554 kb on - strand, within Psyr_2320 at 2696.555 kb on + strand, within Psyr_2320 at 2696.555 kb on + strand, within Psyr_2320 at 2696.555 kb on + strand, within Psyr_2320 at 2696.555 kb on + strand, within Psyr_2320 at 2696.555 kb on + strand, within Psyr_2320 at 2696.556 kb on - strand, within Psyr_2320 at 2696.556 kb on - strand, within Psyr_2320 at 2696.556 kb on - strand, within Psyr_2320 at 2696.559 kb on + strand, within Psyr_2320 at 2696.560 kb on - strand, within Psyr_2320 at 2696.561 kb on + strand, within Psyr_2320 at 2696.598 kb on - strand, within Psyr_2320 at 2696.617 kb on - strand, within Psyr_2320 at 2696.617 kb on - strand, within Psyr_2320 at 2696.617 kb on - strand, within Psyr_2320 at 2696.622 kb on + strand, within Psyr_2320 at 2696.623 kb on - strand, within Psyr_2320 at 2696.623 kb on - strand, within Psyr_2320 at 2696.666 kb on + strand at 2696.669 kb on + strand at 2696.670 kb on - strand at 2696.670 kb on - strand at 2696.754 kb on + strand at 2696.754 kb on + strand at 2696.755 kb on - strand at 2696.755 kb on - strand at 2696.755 kb on - strand at 2696.756 kb on + strand at 2696.756 kb on + strand at 2696.756 kb on + strand at 2696.756 kb on + strand at 2696.757 kb on - strand at 2696.757 kb on - strand at 2696.757 kb on - strand at 2696.760 kb on + strand at 2696.760 kb on + strand at 2696.809 kb on + strand at 2696.841 kb on + strand at 2696.872 kb on + strand at 2696.873 kb on - strand at 2696.873 kb on - strand at 2696.999 kb on + strand, within Psyr_2321 at 2696.999 kb on + strand, within Psyr_2321 at 2697.000 kb on - strand, within Psyr_2321 at 2697.000 kb on - strand, within Psyr_2321 at 2697.073 kb on + strand, within Psyr_2321 at 2697.105 kb on + strand, within Psyr_2321 at 2697.157 kb on + strand, within Psyr_2321 at 2697.311 kb on + strand, within Psyr_2321 at 2697.311 kb on + strand, within Psyr_2321 at 2697.311 kb on + strand, within Psyr_2321 at 2697.312 kb on - strand, within Psyr_2321 at 2697.550 kb on + strand, within Psyr_2321 at 2697.551 kb on - strand, within Psyr_2321 at 2697.682 kb on - strand, within Psyr_2321 at 2697.685 kb on + strand, within Psyr_2321 at 2697.685 kb on + strand, within Psyr_2321 at 2697.685 kb on + strand, within Psyr_2321 at 2697.686 kb on - strand, within Psyr_2321 at 2697.686 kb on - strand, within Psyr_2321 at 2697.691 kb on + strand, within Psyr_2321 at 2697.804 kb on + strand, within Psyr_2321
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 2,694,446 + +0.3 2,694,446 + -0.7 2,694,446 + -1.2 2,694,447 - +1.4 2,694,467 + +0.4 2,694,467 + -0.4 2,694,468 - +0.1 2,694,468 - +0.0 2,694,468 - +1.0 2,694,468 - -0.6 2,694,468 - +0.4 2,694,567 - +0.1 2,694,570 - +0.8 2,694,570 - +0.5 2,694,570 - +1.4 2,694,597 + +2.4 2,694,608 + +0.1 2,694,622 - +0.7 2,694,624 + -1.0 2,694,624 + -1.2 2,694,624 + +0.6 2,694,625 - +0.1 2,694,713 - +1.4 2,694,740 + +1.1 2,694,741 - -0.5 2,694,744 + +0.4 2,694,959 + +0.7 2,694,959 + -1.8 2,694,959 + -0.6 2,694,959 + +0.6 2,694,960 - -1.6 2,694,960 - -0.6 2,694,960 - -0.4 2,694,960 - -0.6 2,694,960 - -0.6 2,694,960 - +0.4 2,694,963 + -0.4 2,694,964 - -0.6 2,695,031 - +0.4 2,695,031 - +0.4 2,695,144 - -0.4 2,695,144 - -1.3 2,695,144 - -0.6 2,695,144 - -0.2 2,695,163 + -0.2 2,695,164 - +0.4 2,695,164 - +0.8 2,695,165 + -0.0 2,695,313 + +0.4 2,695,314 - -0.2 2,695,392 + -1.2 2,695,392 + -1.4 2,695,392 + -0.6 2,695,392 + -0.2 2,695,393 - +0.6 2,695,393 - -0.2 2,695,393 - +1.4 2,695,393 - +1.4 2,695,395 - +2.7 2,695,398 + -1.4 2,695,399 - -1.2 2,695,470 + Psyr_2320 0.12 -0.2 2,695,534 - Psyr_2320 0.17 +1.4 2,695,597 + Psyr_2320 0.21 +1.4 2,695,613 + Psyr_2320 0.22 +1.4 2,695,614 - Psyr_2320 0.22 +1.4 2,695,614 - Psyr_2320 0.22 -1.0 2,695,614 - Psyr_2320 0.22 -0.2 2,695,712 + Psyr_2320 0.28 +1.4 2,695,743 + +1.4 2,695,823 - Psyr_2320 0.35 -1.2 2,695,928 + Psyr_2320 0.42 -0.6 2,695,934 + Psyr_2320 0.43 +1.4 2,695,935 - Psyr_2320 0.43 +0.4 2,695,951 + Psyr_2320 0.44 -0.2 2,695,983 - Psyr_2320 0.46 +1.4 2,696,196 + Psyr_2320 0.60 -1.6 2,696,196 + Psyr_2320 0.60 -2.0 2,696,266 - Psyr_2320 0.65 +0.4 2,696,336 + Psyr_2320 0.69 -0.1 2,696,347 - Psyr_2320 0.70 +1.4 2,696,433 - Psyr_2320 0.75 +0.4 2,696,466 + Psyr_2320 0.78 -1.8 2,696,467 - Psyr_2320 0.78 -1.0 2,696,554 - Psyr_2320 0.83 +1.4 2,696,554 - Psyr_2320 0.83 +1.4 2,696,555 + Psyr_2320 0.83 -0.4 2,696,555 + Psyr_2320 0.83 +0.1 2,696,555 + Psyr_2320 0.83 -1.2 2,696,555 + Psyr_2320 0.83 -0.9 2,696,555 + Psyr_2320 0.83 -2.1 2,696,556 - Psyr_2320 0.83 +1.4 2,696,556 - Psyr_2320 0.83 -1.6 2,696,556 - Psyr_2320 0.83 -0.2 2,696,559 + Psyr_2320 0.84 +0.1 2,696,560 - Psyr_2320 0.84 -1.0 2,696,561 + Psyr_2320 0.84 -0.6 2,696,598 - Psyr_2320 0.86 -0.4 2,696,617 - Psyr_2320 0.87 -0.2 2,696,617 - Psyr_2320 0.87 -2.6 2,696,617 - Psyr_2320 0.87 -0.2 2,696,622 + Psyr_2320 0.88 +1.4 2,696,623 - Psyr_2320 0.88 -0.2 2,696,623 - Psyr_2320 0.88 -1.4 2,696,666 + -0.2 2,696,669 + -0.2 2,696,670 - -1.5 2,696,670 - -1.6 2,696,754 + +0.1 2,696,754 + +0.1 2,696,755 - -0.5 2,696,755 - +2.4 2,696,755 - -1.7 2,696,756 + +0.4 2,696,756 + -2.5 2,696,756 + -1.4 2,696,756 + -1.0 2,696,757 - -1.1 2,696,757 - +0.4 2,696,757 - -0.8 2,696,760 + +0.8 2,696,760 + -1.6 2,696,809 + -1.6 2,696,841 + -1.0 2,696,872 + -1.3 2,696,873 - +1.4 2,696,873 - -1.4 2,696,999 + Psyr_2321 0.12 +0.3 2,696,999 + Psyr_2321 0.12 +1.4 2,697,000 - Psyr_2321 0.12 +1.4 2,697,000 - Psyr_2321 0.12 -0.2 2,697,073 + Psyr_2321 0.17 +0.0 2,697,105 + Psyr_2321 0.19 -1.3 2,697,157 + Psyr_2321 0.23 -0.0 2,697,311 + Psyr_2321 0.33 -2.0 2,697,311 + Psyr_2321 0.33 -0.4 2,697,311 + Psyr_2321 0.33 -1.2 2,697,312 - Psyr_2321 0.33 +1.4 2,697,550 + Psyr_2321 0.49 -1.5 2,697,551 - Psyr_2321 0.49 +1.4 2,697,682 - Psyr_2321 0.58 -0.2 2,697,685 + Psyr_2321 0.58 -2.1 2,697,685 + Psyr_2321 0.58 -0.6 2,697,685 + Psyr_2321 0.58 -0.5 2,697,686 - Psyr_2321 0.58 -0.2 2,697,686 - Psyr_2321 0.58 -0.2 2,697,691 + Psyr_2321 0.58 -2.4 2,697,804 + Psyr_2321 0.66 -1.0
Or see this region's nucleotide sequence