Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2166

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2163 and Psyr_2164 are separated by 60 nucleotidesPsyr_2164 and Psyr_2165 are separated by 29 nucleotidesPsyr_2165 and Psyr_2166 are separated by 104 nucleotidesPsyr_2166 and Psyr_2167 are separated by 27 nucleotides Psyr_2163: Psyr_2163 - bacterial translation initiation factor 3 (bIF-3), at 2,517,675 to 2,518,208 _2163 Psyr_2164: Psyr_2164 - LSU ribosomal protein L35P, at 2,518,269 to 2,518,463 _2164 Psyr_2165: Psyr_2165 - LSU ribosomal protein L20P, at 2,518,493 to 2,518,849 _2165 Psyr_2166: Psyr_2166 - phenylalanyl-tRNA synthetase, alpha subunit, at 2,518,954 to 2,519,970 _2166 Psyr_2167: Psyr_2167 - phenylalanyl-tRNA synthetase beta subunit, at 2,519,998 to 2,522,376 _2167 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -1 0 1at 2518.938 kb on + strandat 2519.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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2,518,938 + +1.1
2,519,975 + +0.4

Or see this region's nucleotide sequence