Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2010

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2009 and Psyr_2010 are separated by 41 nucleotidesPsyr_2010 and Psyr_2011 are separated by 172 nucleotides Psyr_2009: Psyr_2009 - 2-oxoglutarate dehydrogenase E1 component, at 2,329,661 to 2,332,492 _2009 Psyr_2010: Psyr_2010 - 2-oxoglutarate dehydrogenase E2 component, at 2,332,534 to 2,333,769 _2010 Psyr_2011: Psyr_2011 - dihydrolipoamide dehydrogenase, at 2,333,942 to 2,335,378 _2011 Position (kb) 2332 2333 2334Strain fitness (log2 ratio) -1 0 1at 2332.506 kb on + strandat 2333.923 kb on + strandat 2333.923 kb on + strandat 2333.925 kb on + strandat 2333.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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2,332,506 + -0.9
2,333,923 + -0.5
2,333,923 + -1.1
2,333,925 + +0.7
2,333,925 + -1.2

Or see this region's nucleotide sequence