Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1749 and Psyr_1750 are separated by 146 nucleotides Psyr_1750 and Psyr_1751 are separated by 205 nucleotides
Psyr_1749: Psyr_1749 - ATP-dependent proteinase, Serine peptidase, MEROPS family S16, at 1,987,022 to 1,989,418
_1749
Psyr_1750: Psyr_1750 - bacterial nucleoid protein HU beta subunit, at 1,989,565 to 1,989,837
_1750
Psyr_1751: Psyr_1751 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 1,990,043 to 1,991,926
_1751
Position (kb) 1989
1990 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1988.612 kb on + strand, within Psyr_1749 at 1988.612 kb on + strand, within Psyr_1749 at 1988.613 kb on - strand, within Psyr_1749 at 1988.613 kb on - strand, within Psyr_1749 at 1989.256 kb on + strand at 1989.352 kb on + strand at 1989.406 kb on + strand at 1989.406 kb on + strand at 1989.416 kb on + strand at 1989.416 kb on + strand at 1989.459 kb on + strand at 1989.461 kb on + strand at 1989.461 kb on + strand at 1989.551 kb on + strand at 1989.561 kb on + strand at 1989.709 kb on - strand, within Psyr_1750 at 1989.835 kb on + strand at 1989.982 kb on + strand at 1989.982 kb on + strand at 1990.021 kb on + strand at 1990.021 kb on + strand at 1990.021 kb on + strand at 1990.021 kb on + strand at 1990.022 kb on - strand at 1990.055 kb on - strand at 1990.482 kb on + strand, within Psyr_1751 at 1990.483 kb on - strand, within Psyr_1751 at 1990.483 kb on - strand, within Psyr_1751 at 1990.487 kb on + strand, within Psyr_1751 at 1990.695 kb on - strand, within Psyr_1751 at 1990.745 kb on + strand, within Psyr_1751
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 1,988,612 + Psyr_1749 0.66 +1.6 1,988,612 + Psyr_1749 0.66 -1.6 1,988,613 - Psyr_1749 0.66 -2.0 1,988,613 - Psyr_1749 0.66 -0.6 1,989,256 + -1.0 1,989,352 + +1.0 1,989,406 + +1.0 1,989,406 + +0.1 1,989,416 + +1.4 1,989,416 + +0.1 1,989,459 + +0.4 1,989,461 + +0.1 1,989,461 + +1.1 1,989,551 + +1.4 1,989,561 + -1.2 1,989,709 - Psyr_1750 0.53 +0.8 1,989,835 + -0.2 1,989,982 + +0.0 1,989,982 + +0.8 1,990,021 + -0.3 1,990,021 + -1.1 1,990,021 + -1.0 1,990,021 + +0.5 1,990,022 - -0.8 1,990,055 - -0.6 1,990,482 + Psyr_1751 0.23 +0.0 1,990,483 - Psyr_1751 0.23 -2.8 1,990,483 - Psyr_1751 0.23 +0.0 1,990,487 + Psyr_1751 0.24 -2.3 1,990,695 - Psyr_1751 0.35 -1.7 1,990,745 + Psyr_1751 0.37 -2.3
Or see this region's nucleotide sequence