Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1653

Experiment: KB with Aristolochic Acid 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1651 and Psyr_1652 are separated by 19 nucleotidesPsyr_1652 and Psyr_1653 overlap by 8 nucleotidesPsyr_1653 and Psyr_1654 are separated by 34 nucleotidesPsyr_1654 and Psyr_1655 are separated by 14 nucleotides Psyr_1651: Psyr_1651 - Protein of unknown function DUF175, at 1,855,885 to 1,857,000 _1651 Psyr_1652: Psyr_1652 - thymidylate kinase, at 1,857,020 to 1,857,652 _1652 Psyr_1653: Psyr_1653 - DNA polymerase III, delta prime subunit, at 1,857,645 to 1,858,631 _1653 Psyr_1654: Psyr_1654 - Type IV pilus assembly PilZ, at 1,858,666 to 1,859,022 _1654 Psyr_1655: Psyr_1655 - TatD-related deoxyribonuclease, at 1,859,037 to 1,859,822 _1655 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1856.677 kb on + strand, within Psyr_1651at 1856.677 kb on + strand, within Psyr_1651at 1856.677 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.686 kb on + strand, within Psyr_1651at 1856.779 kb on + strand, within Psyr_1651at 1858.629 kb on + strandat 1858.629 kb on + strandat 1858.695 kb on + strandat 1858.696 kb on - strandat 1858.738 kb on + strand, within Psyr_1654at 1858.739 kb on - strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.747 kb on + strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.748 kb on - strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.749 kb on + strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.750 kb on - strand, within Psyr_1654at 1858.761 kb on + strand, within Psyr_1654at 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.020 kb on + strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.021 kb on - strandat 1859.032 kb on - strandat 1859.032 kb on - strandat 1859.044 kb on + strandat 1859.044 kb on + strandat 1859.044 kb on + strandat 1859.044 kb on + strandat 1859.045 kb on - strandat 1859.045 kb on - strandat 1859.045 kb on - strandat 1859.335 kb on - strand, within Psyr_1655at 1859.335 kb on - strand, within Psyr_1655at 1859.340 kb on + strand, within Psyr_1655at 1859.341 kb on - strand, within Psyr_1655at 1859.551 kb on - strand, within Psyr_1655at 1859.551 kb on - strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.553 kb on + strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655at 1859.554 kb on - strand, within Psyr_1655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
remove
1,856,677 + Psyr_1651 0.71 -1.6
1,856,677 + Psyr_1651 0.71 -0.6
1,856,677 + Psyr_1651 0.71 -1.2
1,856,686 + Psyr_1651 0.72 -0.7
1,856,686 + Psyr_1651 0.72 +1.2
1,856,686 + Psyr_1651 0.72 +0.1
1,856,686 + Psyr_1651 0.72 +0.1
1,856,686 + Psyr_1651 0.72 -0.9
1,856,686 + Psyr_1651 0.72 -1.2
1,856,686 + Psyr_1651 0.72 +0.5
1,856,686 + Psyr_1651 0.72 -0.3
1,856,779 + Psyr_1651 0.80 +1.7
1,858,629 + +0.3
1,858,629 + -0.8
1,858,695 + -1.9
1,858,696 - -0.4
1,858,738 + Psyr_1654 0.20 -1.3
1,858,739 - Psyr_1654 0.20 -0.6
1,858,747 + Psyr_1654 0.23 +0.0
1,858,747 + Psyr_1654 0.23 +0.9
1,858,747 + Psyr_1654 0.23 +1.4
1,858,747 + Psyr_1654 0.23 -1.7
1,858,747 + Psyr_1654 0.23 +1.3
1,858,747 + Psyr_1654 0.23 +0.2
1,858,747 + Psyr_1654 0.23 -0.6
1,858,747 + Psyr_1654 0.23 -0.9
1,858,747 + Psyr_1654 0.23 +0.1
1,858,747 + Psyr_1654 0.23 -1.4
1,858,747 + Psyr_1654 0.23 +0.2
1,858,748 - Psyr_1654 0.23 +0.2
1,858,748 - Psyr_1654 0.23 +0.3
1,858,748 - Psyr_1654 0.23 +0.3
1,858,748 - Psyr_1654 0.23 -2.0
1,858,748 - Psyr_1654 0.23 -2.1
1,858,748 - Psyr_1654 0.23 +0.7
1,858,748 - Psyr_1654 0.23 +0.3
1,858,748 - Psyr_1654 0.23 +0.2
1,858,748 - Psyr_1654 0.23 -1.9
1,858,748 - Psyr_1654 0.23 +0.4
1,858,748 - Psyr_1654 0.23 -2.7
1,858,748 - Psyr_1654 0.23 -1.4
1,858,748 - Psyr_1654 0.23 -1.9
1,858,748 - Psyr_1654 0.23 +0.2
1,858,748 - Psyr_1654 0.23 -0.6
1,858,748 - Psyr_1654 0.23 +1.0
1,858,748 - Psyr_1654 0.23 +0.5
1,858,748 - Psyr_1654 0.23 +1.6
1,858,748 - Psyr_1654 0.23 -2.1
1,858,748 - Psyr_1654 0.23 +0.4
1,858,748 - Psyr_1654 0.23 -1.6
1,858,749 + Psyr_1654 0.23 +0.9
1,858,749 + Psyr_1654 0.23 -0.5
1,858,749 + Psyr_1654 0.23 -0.9
1,858,749 + Psyr_1654 0.23 -0.3
1,858,749 + Psyr_1654 0.23 -1.1
1,858,750 - Psyr_1654 0.24 -1.4
1,858,750 - Psyr_1654 0.24 -0.9
1,858,750 - Psyr_1654 0.24 -2.5
1,858,750 - Psyr_1654 0.24 +0.4
1,858,750 - Psyr_1654 0.24 +0.6
1,858,761 + Psyr_1654 0.27 +0.5
1,859,020 + -2.3
1,859,020 + -0.1
1,859,020 + -1.9
1,859,020 + -0.2
1,859,020 + -0.1
1,859,020 + -0.4
1,859,020 + +0.5
1,859,020 + +3.0
1,859,020 + -0.3
1,859,020 + +0.7
1,859,020 + +1.4
1,859,020 + -0.4
1,859,020 + -2.1
1,859,021 - -0.2
1,859,021 - +1.4
1,859,021 - +0.0
1,859,021 - -0.6
1,859,021 - -0.9
1,859,021 - -0.2
1,859,021 - -0.6
1,859,032 - -1.9
1,859,032 - -2.1
1,859,044 + +1.0
1,859,044 + -1.2
1,859,044 + -1.6
1,859,044 + -0.5
1,859,045 - -0.9
1,859,045 - -0.7
1,859,045 - -1.3
1,859,335 - Psyr_1655 0.38 +0.3
1,859,335 - Psyr_1655 0.38 -1.5
1,859,340 + Psyr_1655 0.39 -0.7
1,859,341 - Psyr_1655 0.39 +0.2
1,859,551 - Psyr_1655 0.65 +0.6
1,859,551 - Psyr_1655 0.65 -0.9
1,859,553 + Psyr_1655 0.66 +0.7
1,859,553 + Psyr_1655 0.66 +0.2
1,859,553 + Psyr_1655 0.66 +0.4
1,859,554 - Psyr_1655 0.66 +0.4
1,859,554 - Psyr_1655 0.66 +0.7
1,859,554 - Psyr_1655 0.66 +0.3
1,859,554 - Psyr_1655 0.66 -0.3

Or see this region's nucleotide sequence