Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1635

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1633 and Psyr_1634 overlap by 4 nucleotidesPsyr_1634 and Psyr_1635 overlap by 1 nucleotidesPsyr_1635 and Psyr_1636 are separated by 199 nucleotidesPsyr_1636 and Psyr_1637 are separated by 34 nucleotides Psyr_1633: Psyr_1633 - MotA/TolQ/ExbB proton channel, at 1,837,974 to 1,838,690 _1633 Psyr_1634: Psyr_1634 - Biopolymer transport protein ExbD/TolR, at 1,838,687 to 1,839,118 _1634 Psyr_1635: Psyr_1635 - lipid-A-disaccharide kinase, at 1,839,118 to 1,840,113 _1635 Psyr_1636: Psyr_1636 - 3-deoxy-D-manno-octulosonate cytidylyltransferase, at 1,840,313 to 1,841,077 _1636 Psyr_1637: Psyr_1637 - UDP-N-acetylmuramate dehydrogenase, at 1,841,112 to 1,842,131 _1637 Position (kb) 1839 1840 1841Strain fitness (log2 ratio) -2 -1 0 1at 1838.328 kb on + strand, within Psyr_1633at 1838.328 kb on + strand, within Psyr_1633at 1840.097 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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1,838,328 + Psyr_1633 0.49 -2.0
1,838,328 + Psyr_1633 0.49 -0.1
1,840,097 + -0.2

Or see this region's nucleotide sequence