Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1611

Experiment: KB with Aristolochic Acid 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1610 and Psyr_1611 are separated by 90 nucleotidesPsyr_1611 and Psyr_1612 overlap by 1 nucleotides Psyr_1610: Psyr_1610 - ribosomal large subunit pseudouridine synthase A, at 1,813,864 to 1,814,499 _1610 Psyr_1611: Psyr_1611 - cell division topological specificity factor MinE, at 1,814,590 to 1,814,844 _1611 Psyr_1612: Psyr_1612 - septum site-determining protein MinD, at 1,814,844 to 1,815,656 _1612 Position (kb) 1814 1815Strain fitness (log2 ratio) -2 -1 0 1at 1813.845 kb on - strandat 1814.078 kb on + strand, within Psyr_1610at 1814.078 kb on + strand, within Psyr_1610at 1814.078 kb on + strand, within Psyr_1610at 1814.078 kb on + strand, within Psyr_1610at 1814.079 kb on - strand, within Psyr_1610at 1814.079 kb on - strand, within Psyr_1610at 1814.079 kb on - strand, within Psyr_1610at 1814.079 kb on - strand, within Psyr_1610at 1814.235 kb on - strand, within Psyr_1610at 1814.235 kb on - strand, within Psyr_1610at 1814.235 kb on - strand, within Psyr_1610at 1814.346 kb on + strand, within Psyr_1610at 1814.883 kb on - strandat 1815.313 kb on + strand, within Psyr_1612at 1815.314 kb on - strand, within Psyr_1612at 1815.636 kb on - strandat 1815.770 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.791 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
remove
1,813,845 - +0.5
1,814,078 + Psyr_1610 0.34 -0.5
1,814,078 + Psyr_1610 0.34 +0.1
1,814,078 + Psyr_1610 0.34 -1.2
1,814,078 + Psyr_1610 0.34 +0.1
1,814,079 - Psyr_1610 0.34 -1.1
1,814,079 - Psyr_1610 0.34 -0.6
1,814,079 - Psyr_1610 0.34 -1.8
1,814,079 - Psyr_1610 0.34 -0.3
1,814,235 - Psyr_1610 0.58 +0.3
1,814,235 - Psyr_1610 0.58 +1.0
1,814,235 - Psyr_1610 0.58 -0.1
1,814,346 + Psyr_1610 0.76 -0.2
1,814,883 - +1.4
1,815,313 + Psyr_1612 0.58 +0.3
1,815,314 - Psyr_1612 0.58 -0.9
1,815,636 - +1.4
1,815,770 - -0.1
1,815,791 - +0.7
1,815,791 - +0.2
1,815,791 - -0.7
1,815,791 - -1.0
1,815,791 - -0.0

Or see this region's nucleotide sequence