Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1285

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1283 and Psyr_1284 are separated by 5 nucleotidesPsyr_1284 and Psyr_1285 are separated by 44 nucleotidesPsyr_1285 and Psyr_1286 are separated by 103 nucleotides Psyr_1283: Psyr_1283 - 16S rRNA processing protein RimM, at 1,449,236 to 1,449,775 _1283 Psyr_1284: Psyr_1284 - tRNA (Guanine37-N(1)-) methyltransferase, at 1,449,781 to 1,450,533 _1284 Psyr_1285: Psyr_1285 - LSU ribosomal protein L19P, at 1,450,578 to 1,450,928 _1285 Psyr_1286: Psyr_1286 - tyrosine recombinase XerD subunit, at 1,451,032 to 1,451,928 _1286 Position (kb) 1450 1451Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1450.876 kb on - strand, within Psyr_1285at 1451.028 kb on - strandat 1451.028 kb on - strandat 1451.233 kb on + strand, within Psyr_1286at 1451.233 kb on + strand, within Psyr_1286at 1451.233 kb on + strand, within Psyr_1286at 1451.234 kb on - strand, within Psyr_1286at 1451.234 kb on - strand, within Psyr_1286at 1451.234 kb on - strand, within Psyr_1286at 1451.236 kb on - strand, within Psyr_1286at 1451.236 kb on - strand, within Psyr_1286at 1451.281 kb on + strand, within Psyr_1286at 1451.282 kb on - strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.287 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.461 kb on + strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.462 kb on - strand, within Psyr_1286at 1451.608 kb on + strand, within Psyr_1286at 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.866 kb on + strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strandat 1451.867 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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1,450,876 - Psyr_1285 0.85 +3.4
1,451,028 - +0.1
1,451,028 - +1.2
1,451,233 + Psyr_1286 0.22 +0.9
1,451,233 + Psyr_1286 0.22 -0.4
1,451,233 + Psyr_1286 0.22 +1.4
1,451,234 - Psyr_1286 0.23 -0.0
1,451,234 - Psyr_1286 0.23 -1.0
1,451,234 - Psyr_1286 0.23 +0.8
1,451,236 - Psyr_1286 0.23 +0.2
1,451,236 - Psyr_1286 0.23 -0.6
1,451,281 + Psyr_1286 0.28 -0.3
1,451,282 - Psyr_1286 0.28 -0.2
1,451,287 + Psyr_1286 0.28 +1.1
1,451,287 + Psyr_1286 0.28 -0.5
1,451,287 + Psyr_1286 0.28 -0.5
1,451,461 + Psyr_1286 0.48 -0.3
1,451,461 + Psyr_1286 0.48 -1.5
1,451,461 + Psyr_1286 0.48 +0.2
1,451,461 + Psyr_1286 0.48 -1.1
1,451,461 + Psyr_1286 0.48 +0.1
1,451,461 + Psyr_1286 0.48 -0.2
1,451,461 + Psyr_1286 0.48 +0.9
1,451,462 - Psyr_1286 0.48 -0.1
1,451,462 - Psyr_1286 0.48 -1.2
1,451,462 - Psyr_1286 0.48 -0.2
1,451,462 - Psyr_1286 0.48 -0.1
1,451,608 + Psyr_1286 0.64 +0.5
1,451,866 + -0.6
1,451,866 + +0.1
1,451,866 + -2.2
1,451,866 + -0.2
1,451,866 + -1.8
1,451,866 + +0.2
1,451,866 + +0.1
1,451,867 - +0.2
1,451,867 - +4.0
1,451,867 - -1.5
1,451,867 - +0.9
1,451,867 - +0.0

Or see this region's nucleotide sequence