Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1241 and Psyr_1242 are separated by 3 nucleotides Psyr_1242 and Psyr_1243 are separated by 14 nucleotides Psyr_1243 and Psyr_1244 are separated by 96 nucleotides Psyr_1244 and Psyr_1245 are separated by 33 nucleotides
Psyr_1241: Psyr_1241 - Fe-S protein assembly chaperone HscA, at 1,397,426 to 1,399,288
_1241
Psyr_1242: Psyr_1242 - Ferredoxin, 2Fe-2S type, at 1,399,292 to 1,399,633
_1242
Psyr_1243: Psyr_1243 - Protein of unknown function DUF528, at 1,399,648 to 1,399,848
_1243
Psyr_1244: Psyr_1244 - nucleoside diphosphate kinase, at 1,399,945 to 1,400,370
_1244
Psyr_1245: Psyr_1245 - 23S rRNA m(2)A-2503 methyltransferase, at 1,400,404 to 1,401,552
_1245
Position (kb) 1399
1400
1401 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1399.712 kb on + strand, within Psyr_1243 at 1399.713 kb on - strand at 1399.713 kb on - strand, within Psyr_1243 at 1399.876 kb on + strand at 1399.876 kb on + strand at 1399.876 kb on + strand at 1399.876 kb on + strand at 1399.877 kb on - strand at 1399.877 kb on - strand at 1399.877 kb on - strand at 1399.892 kb on + strand at 1399.894 kb on + strand at 1399.894 kb on + strand at 1400.357 kb on + strand at 1400.368 kb on + strand at 1400.475 kb on + strand at 1400.653 kb on - strand, within Psyr_1245 at 1400.669 kb on + strand, within Psyr_1245 at 1400.669 kb on + strand, within Psyr_1245 at 1400.698 kb on + strand, within Psyr_1245 at 1400.698 kb on + strand, within Psyr_1245 at 1400.698 kb on + strand, within Psyr_1245 at 1400.699 kb on - strand, within Psyr_1245 at 1400.699 kb on - strand, within Psyr_1245 at 1400.699 kb on - strand, within Psyr_1245 at 1400.700 kb on + strand, within Psyr_1245 at 1400.701 kb on - strand, within Psyr_1245 at 1400.977 kb on + strand, within Psyr_1245 at 1401.010 kb on - strand, within Psyr_1245 at 1401.023 kb on + strand, within Psyr_1245 at 1401.166 kb on + strand, within Psyr_1245 at 1401.166 kb on + strand, within Psyr_1245 at 1401.167 kb on - strand, within Psyr_1245 at 1401.167 kb on - strand, within Psyr_1245 at 1401.167 kb on - strand, within Psyr_1245 at 1401.167 kb on - strand, within Psyr_1245 at 1401.208 kb on + strand, within Psyr_1245 at 1401.239 kb on + strand, within Psyr_1245 at 1401.239 kb on + strand, within Psyr_1245 at 1401.240 kb on - strand, within Psyr_1245 at 1401.329 kb on - strand, within Psyr_1245
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 1,399,712 + Psyr_1243 0.32 -0.3 1,399,713 - +1.4 1,399,713 - Psyr_1243 0.32 +0.4 1,399,876 + +0.5 1,399,876 + -0.2 1,399,876 + +0.6 1,399,876 + -0.3 1,399,877 - -2.9 1,399,877 - -1.4 1,399,877 - +0.3 1,399,892 + -1.0 1,399,894 + -0.2 1,399,894 + +0.7 1,400,357 + -0.3 1,400,368 + +0.6 1,400,475 + +1.1 1,400,653 - Psyr_1245 0.22 -2.0 1,400,669 + Psyr_1245 0.23 +0.0 1,400,669 + Psyr_1245 0.23 -0.6 1,400,698 + Psyr_1245 0.26 -0.0 1,400,698 + Psyr_1245 0.26 +0.4 1,400,698 + Psyr_1245 0.26 +0.4 1,400,699 - Psyr_1245 0.26 +0.5 1,400,699 - Psyr_1245 0.26 -1.0 1,400,699 - Psyr_1245 0.26 +0.2 1,400,700 + Psyr_1245 0.26 -1.8 1,400,701 - Psyr_1245 0.26 +0.4 1,400,977 + Psyr_1245 0.50 -1.2 1,401,010 - Psyr_1245 0.53 +1.0 1,401,023 + Psyr_1245 0.54 -0.4 1,401,166 + Psyr_1245 0.66 -0.2 1,401,166 + Psyr_1245 0.66 -2.0 1,401,167 - Psyr_1245 0.66 -0.3 1,401,167 - Psyr_1245 0.66 -1.4 1,401,167 - Psyr_1245 0.66 -1.4 1,401,167 - Psyr_1245 0.66 -0.6 1,401,208 + Psyr_1245 0.70 -2.0 1,401,239 + Psyr_1245 0.73 -0.3 1,401,239 + Psyr_1245 0.73 +0.6 1,401,240 - Psyr_1245 0.73 +1.4 1,401,329 - Psyr_1245 0.81 -1.8
Or see this region's nucleotide sequence