Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1194

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1193 and Psyr_1194 are separated by 27 nucleotidesPsyr_1194 and Psyr_1195 are separated by 8 nucleotidesPsyr_1195 and Psyr_1196 overlap by 1 nucleotides Psyr_1193: Psyr_1193 - type III helper protein HrpZ1, at 1,353,667 to 1,354,698 _1193 Psyr_1194: Psyr_1194 - type III secretion protein HrpB, at 1,354,726 to 1,355,100 _1194 Psyr_1195: Psyr_1195 - type III secretion apparatus lipoprotein, YscJ/HrcJ family, at 1,355,109 to 1,355,915 _1195 Psyr_1196: Psyr_1196 - type III secretion protein HrpD, at 1,355,915 to 1,356,442 _1196 Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -2 -1 0 1 2at 1354.093 kb on - strand, within Psyr_1193at 1354.398 kb on + strand, within Psyr_1193at 1354.398 kb on + strand, within Psyr_1193at 1354.398 kb on + strand, within Psyr_1193at 1354.659 kb on + strandat 1354.659 kb on + strandat 1354.659 kb on + strandat 1354.660 kb on - strandat 1354.752 kb on + strandat 1354.752 kb on + strandat 1354.752 kb on + strandat 1354.753 kb on - strandat 1354.888 kb on - strand, within Psyr_1194at 1355.088 kb on + strandat 1355.099 kb on - strandat 1355.149 kb on + strandat 1355.150 kb on - strandat 1355.243 kb on + strand, within Psyr_1195at 1355.243 kb on + strand, within Psyr_1195at 1355.424 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.470 kb on + strand, within Psyr_1195at 1355.471 kb on - strand, within Psyr_1195at 1355.503 kb on + strand, within Psyr_1195at 1355.503 kb on + strand, within Psyr_1195at 1355.503 kb on + strand, within Psyr_1195at 1355.504 kb on - strand, within Psyr_1195at 1355.936 kb on + strandat 1355.937 kb on - strandat 1355.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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1,354,093 - Psyr_1193 0.41 -0.1
1,354,398 + Psyr_1193 0.71 +0.2
1,354,398 + Psyr_1193 0.71 +2.0
1,354,398 + Psyr_1193 0.71 -0.9
1,354,659 + -0.6
1,354,659 + +0.1
1,354,659 + -0.8
1,354,660 - +0.8
1,354,752 + +1.0
1,354,752 + -0.5
1,354,752 + -1.8
1,354,753 - -0.2
1,354,888 - Psyr_1194 0.43 +0.1
1,355,088 + -0.3
1,355,099 - -0.9
1,355,149 + +1.1
1,355,150 - +0.4
1,355,243 + Psyr_1195 0.17 -0.4
1,355,243 + Psyr_1195 0.17 +0.5
1,355,424 + Psyr_1195 0.39 +0.4
1,355,430 + Psyr_1195 0.40 -0.7
1,355,430 + Psyr_1195 0.40 -1.5
1,355,430 + Psyr_1195 0.40 -0.2
1,355,430 + Psyr_1195 0.40 -0.3
1,355,430 + Psyr_1195 0.40 -0.1
1,355,430 + Psyr_1195 0.40 +0.7
1,355,430 + Psyr_1195 0.40 +0.9
1,355,430 + Psyr_1195 0.40 -1.1
1,355,430 + Psyr_1195 0.40 -0.4
1,355,430 + Psyr_1195 0.40 +0.7
1,355,430 + Psyr_1195 0.40 -0.0
1,355,430 + Psyr_1195 0.40 -1.8
1,355,431 - Psyr_1195 0.40 +0.5
1,355,431 - Psyr_1195 0.40 +1.1
1,355,431 - Psyr_1195 0.40 +1.1
1,355,431 - Psyr_1195 0.40 +0.1
1,355,431 - Psyr_1195 0.40 +0.0
1,355,431 - Psyr_1195 0.40 -1.0
1,355,431 - Psyr_1195 0.40 +0.6
1,355,431 - Psyr_1195 0.40 +0.4
1,355,431 - Psyr_1195 0.40 -0.0
1,355,431 - Psyr_1195 0.40 -0.4
1,355,431 - Psyr_1195 0.40 +0.2
1,355,431 - Psyr_1195 0.40 +0.1
1,355,431 - Psyr_1195 0.40 +0.7
1,355,431 - Psyr_1195 0.40 +0.2
1,355,431 - Psyr_1195 0.40 -0.3
1,355,431 - Psyr_1195 0.40 -0.2
1,355,431 - Psyr_1195 0.40 +0.6
1,355,431 - Psyr_1195 0.40 -1.9
1,355,431 - Psyr_1195 0.40 +0.3
1,355,470 + Psyr_1195 0.45 +0.8
1,355,471 - Psyr_1195 0.45 +0.5
1,355,503 + Psyr_1195 0.49 -0.1
1,355,503 + Psyr_1195 0.49 +0.2
1,355,503 + Psyr_1195 0.49 -0.4
1,355,504 - Psyr_1195 0.49 +0.7
1,355,936 + +0.3
1,355,937 - +0.4
1,355,937 - +0.1

Or see this region's nucleotide sequence