Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1192

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1191 and Psyr_1192 are separated by 92 nucleotidesPsyr_1192 and Psyr_1193 are separated by 52 nucleotides Psyr_1191: Psyr_1191 - type III transcriptional regulator HrpS, at 1,352,287 to 1,353,195 _1191 Psyr_1192: Psyr_1192 - type III helper protein HrpA2, at 1,353,288 to 1,353,614 _1192 Psyr_1193: Psyr_1193 - type III helper protein HrpZ1, at 1,353,667 to 1,354,698 _1193 Position (kb) 1353 1354Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1352.361 kb on + strandat 1352.540 kb on - strand, within Psyr_1191at 1352.569 kb on + strand, within Psyr_1191at 1352.570 kb on - strand, within Psyr_1191at 1352.570 kb on - strand, within Psyr_1191at 1352.570 kb on - strand, within Psyr_1191at 1352.570 kb on - strand, within Psyr_1191at 1352.599 kb on + strand, within Psyr_1191at 1352.600 kb on - strand, within Psyr_1191at 1352.783 kb on - strand, within Psyr_1191at 1352.841 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.241 kb on - strandat 1353.241 kb on - strandat 1353.241 kb on - strandat 1353.241 kb on - strandat 1353.247 kb on - strandat 1353.257 kb on + strandat 1353.257 kb on + strandat 1353.257 kb on + strandat 1353.258 kb on - strandat 1353.258 kb on - strandat 1353.287 kb on + strandat 1353.287 kb on + strandat 1353.293 kb on + strandat 1353.293 kb on + strandat 1353.293 kb on + strandat 1353.293 kb on + strandat 1353.294 kb on - strandat 1353.294 kb on - strandat 1353.390 kb on - strand, within Psyr_1192at 1353.649 kb on + strandat 1353.649 kb on + strandat 1353.649 kb on + strandat 1353.649 kb on + strandat 1353.649 kb on + strandat 1353.650 kb on - strandat 1353.650 kb on - strandat 1353.650 kb on - strandat 1353.650 kb on - strandat 1353.650 kb on - strandat 1353.684 kb on + strandat 1354.093 kb on - strand, within Psyr_1193at 1354.398 kb on + strand, within Psyr_1193at 1354.398 kb on + strand, within Psyr_1193at 1354.398 kb on + strand, within Psyr_1193

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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1,352,361 + +0.7
1,352,540 - Psyr_1191 0.28 +0.2
1,352,569 + Psyr_1191 0.31 +0.1
1,352,570 - Psyr_1191 0.31 +0.2
1,352,570 - Psyr_1191 0.31 +0.3
1,352,570 - Psyr_1191 0.31 -0.2
1,352,570 - Psyr_1191 0.31 +0.3
1,352,599 + Psyr_1191 0.34 +0.4
1,352,600 - Psyr_1191 0.34 -0.6
1,352,783 - Psyr_1191 0.55 -0.6
1,352,841 + Psyr_1191 0.61 -0.6
1,352,909 + Psyr_1191 0.68 +1.0
1,352,909 + Psyr_1191 0.68 +0.5
1,352,909 + Psyr_1191 0.68 +0.3
1,352,909 + Psyr_1191 0.68 -0.3
1,352,909 + Psyr_1191 0.68 +2.1
1,352,909 + Psyr_1191 0.68 +0.7
1,352,909 + Psyr_1191 0.68 -0.4
1,352,909 + Psyr_1191 0.68 +0.4
1,352,909 + Psyr_1191 0.68 +1.2
1,352,910 - Psyr_1191 0.69 +0.7
1,352,910 - Psyr_1191 0.69 -0.5
1,352,910 - Psyr_1191 0.69 +1.2
1,352,910 - Psyr_1191 0.69 -0.7
1,352,910 - Psyr_1191 0.69 +0.6
1,352,910 - Psyr_1191 0.69 -0.0
1,352,910 - Psyr_1191 0.69 -0.3
1,352,910 - Psyr_1191 0.69 +0.8
1,352,910 - Psyr_1191 0.69 -0.2
1,352,910 - Psyr_1191 0.69 -0.5
1,352,910 - Psyr_1191 0.69 -0.0
1,352,910 - Psyr_1191 0.69 -0.2
1,352,910 - Psyr_1191 0.69 +0.0
1,352,910 - Psyr_1191 0.69 -1.2
1,352,910 - Psyr_1191 0.69 +0.3
1,352,910 - Psyr_1191 0.69 -0.2
1,352,910 - Psyr_1191 0.69 +0.8
1,352,910 - Psyr_1191 0.69 -0.1
1,352,910 - Psyr_1191 0.69 +1.1
1,352,993 + Psyr_1191 0.78 -1.8
1,352,993 + Psyr_1191 0.78 -0.9
1,352,993 + Psyr_1191 0.78 +1.1
1,352,993 + Psyr_1191 0.78 +1.4
1,352,993 + Psyr_1191 0.78 -0.1
1,352,993 + Psyr_1191 0.78 -0.4
1,352,994 - Psyr_1191 0.78 +4.0
1,352,994 - Psyr_1191 0.78 +0.5
1,352,994 - Psyr_1191 0.78 -0.8
1,352,994 - Psyr_1191 0.78 +0.7
1,352,994 - Psyr_1191 0.78 +0.8
1,353,240 + -0.6
1,353,240 + +0.9
1,353,240 + -0.4
1,353,240 + +0.1
1,353,240 + +0.5
1,353,240 + -0.3
1,353,240 + +1.2
1,353,241 - +1.4
1,353,241 - -0.0
1,353,241 - +0.2
1,353,241 - -0.8
1,353,247 - +0.8
1,353,257 + -0.3
1,353,257 + -2.8
1,353,257 + -0.5
1,353,258 - -0.0
1,353,258 - -0.9
1,353,287 + +0.4
1,353,287 + +0.4
1,353,293 + -0.1
1,353,293 + -0.8
1,353,293 + +0.4
1,353,293 + -0.2
1,353,294 - -0.2
1,353,294 - -1.2
1,353,390 - Psyr_1192 0.31 -0.1
1,353,649 + +0.8
1,353,649 + -2.4
1,353,649 + -0.9
1,353,649 + -0.4
1,353,649 + +0.0
1,353,650 - +0.3
1,353,650 - +0.9
1,353,650 - +1.1
1,353,650 - +0.5
1,353,650 - +0.6
1,353,684 + +0.4
1,354,093 - Psyr_1193 0.41 -0.1
1,354,398 + Psyr_1193 0.71 +0.2
1,354,398 + Psyr_1193 0.71 +2.0
1,354,398 + Psyr_1193 0.71 -0.9

Or see this region's nucleotide sequence