Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1086

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1085 and Psyr_1086 are separated by 156 nucleotidesPsyr_1086 and Psyr_1087 are separated by 123 nucleotidesPsyr_1087 and Psyr_1088 overlap by 4 nucleotides Psyr_1085: Psyr_1085 - 23S rRNA m(6)A-1618 methyltransferase, at 1,226,571 to 1,227,557 _1085 Psyr_1086: Psyr_1086 - valyl-tRNA synthetase, at 1,227,714 to 1,230,560 _1086 Psyr_1087: Psyr_1087 - CDS, at 1,230,684 to 1,230,956 _1087 Psyr_1088: Psyr_1088 - CDS, at 1,230,953 to 1,231,684 _1088 Position (kb) 1227 1228 1229 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2at 1227.115 kb on + strand, within Psyr_1085at 1227.123 kb on - strand, within Psyr_1085at 1227.140 kb on - strand, within Psyr_1085at 1227.245 kb on - strand, within Psyr_1085at 1227.245 kb on - strand, within Psyr_1085at 1227.245 kb on - strand, within Psyr_1085at 1227.277 kb on + strand, within Psyr_1085at 1227.278 kb on - strand, within Psyr_1085at 1227.311 kb on - strand, within Psyr_1085at 1227.311 kb on - strand, within Psyr_1085at 1227.648 kb on + strandat 1227.648 kb on + strandat 1227.648 kb on + strandat 1227.649 kb on - strandat 1227.656 kb on + strandat 1227.670 kb on + strandat 1227.715 kb on + strandat 1227.716 kb on - strandat 1227.716 kb on - strandat 1230.605 kb on - strandat 1230.605 kb on - strandat 1230.605 kb on - strandat 1230.605 kb on - strandat 1230.605 kb on - strandat 1230.664 kb on + strandat 1230.664 kb on + strandat 1230.665 kb on - strandat 1230.677 kb on - strandat 1230.719 kb on + strand, within Psyr_1087at 1230.720 kb on - strand, within Psyr_1087at 1230.720 kb on - strand, within Psyr_1087at 1230.749 kb on + strand, within Psyr_1087at 1230.786 kb on + strand, within Psyr_1087at 1230.787 kb on - strand, within Psyr_1087at 1230.787 kb on - strand, within Psyr_1087at 1230.850 kb on - strand, within Psyr_1087at 1230.877 kb on + strand, within Psyr_1087at 1230.877 kb on + strand, within Psyr_1087at 1230.878 kb on - strand, within Psyr_1087at 1230.878 kb on - strand, within Psyr_1087at 1230.965 kb on + strandat 1230.966 kb on - strandat 1230.966 kb on - strandat 1230.966 kb on - strandat 1231.064 kb on + strand, within Psyr_1088at 1231.064 kb on + strand, within Psyr_1088at 1231.065 kb on - strand, within Psyr_1088at 1231.065 kb on - strand, within Psyr_1088at 1231.070 kb on + strand, within Psyr_1088at 1231.071 kb on - strand, within Psyr_1088at 1231.071 kb on - strand, within Psyr_1088at 1231.071 kb on - strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.128 kb on + strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.129 kb on - strand, within Psyr_1088at 1231.196 kb on - strand, within Psyr_1088at 1231.219 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.222 kb on + strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.223 kb on - strand, within Psyr_1088at 1231.252 kb on - strand, within Psyr_1088at 1231.252 kb on - strand, within Psyr_1088at 1231.263 kb on + strand, within Psyr_1088at 1231.263 kb on + strand, within Psyr_1088at 1231.263 kb on + strand, within Psyr_1088at 1231.263 kb on + strand, within Psyr_1088at 1231.268 kb on - strand, within Psyr_1088at 1231.278 kb on + strand, within Psyr_1088at 1231.299 kb on + strand, within Psyr_1088at 1231.300 kb on - strand, within Psyr_1088at 1231.300 kb on - strand, within Psyr_1088at 1231.323 kb on + strand, within Psyr_1088at 1231.324 kb on - strand, within Psyr_1088at 1231.324 kb on - strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.353 kb on + strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.354 kb on - strand, within Psyr_1088at 1231.520 kb on - strand, within Psyr_1088at 1231.522 kb on + strand, within Psyr_1088at 1231.523 kb on - strand, within Psyr_1088

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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1,227,115 + Psyr_1085 0.55 -1.1
1,227,123 - Psyr_1085 0.56 -0.5
1,227,140 - Psyr_1085 0.58 -0.2
1,227,245 - Psyr_1085 0.68 -0.2
1,227,245 - Psyr_1085 0.68 +1.0
1,227,245 - Psyr_1085 0.68 +2.3
1,227,277 + Psyr_1085 0.72 -0.3
1,227,278 - Psyr_1085 0.72 +0.6
1,227,311 - Psyr_1085 0.75 +0.6
1,227,311 - Psyr_1085 0.75 -0.5
1,227,648 + -0.6
1,227,648 + -0.0
1,227,648 + -0.5
1,227,649 - -0.1
1,227,656 + +1.0
1,227,670 + -0.0
1,227,715 + -0.2
1,227,716 - +0.9
1,227,716 - +0.6
1,230,605 - +1.5
1,230,605 - -0.0
1,230,605 - -1.1
1,230,605 - +0.0
1,230,605 - +1.6
1,230,664 + -1.1
1,230,664 + +0.3
1,230,665 - +0.2
1,230,677 - -0.7
1,230,719 + Psyr_1087 0.13 -0.8
1,230,720 - Psyr_1087 0.13 +0.1
1,230,720 - Psyr_1087 0.13 +0.2
1,230,749 + Psyr_1087 0.24 -1.1
1,230,786 + Psyr_1087 0.37 +1.3
1,230,787 - Psyr_1087 0.38 +0.7
1,230,787 - Psyr_1087 0.38 -0.7
1,230,850 - Psyr_1087 0.61 -1.8
1,230,877 + Psyr_1087 0.71 -0.7
1,230,877 + Psyr_1087 0.71 +1.0
1,230,878 - Psyr_1087 0.71 +0.4
1,230,878 - Psyr_1087 0.71 -1.2
1,230,965 + +1.4
1,230,966 - +0.4
1,230,966 - +0.2
1,230,966 - -0.7
1,231,064 + Psyr_1088 0.15 -0.0
1,231,064 + Psyr_1088 0.15 +0.9
1,231,065 - Psyr_1088 0.15 -0.9
1,231,065 - Psyr_1088 0.15 +1.9
1,231,070 + Psyr_1088 0.16 -0.1
1,231,071 - Psyr_1088 0.16 +0.0
1,231,071 - Psyr_1088 0.16 +1.1
1,231,071 - Psyr_1088 0.16 -0.4
1,231,128 + Psyr_1088 0.24 +0.9
1,231,128 + Psyr_1088 0.24 -0.2
1,231,128 + Psyr_1088 0.24 -0.2
1,231,128 + Psyr_1088 0.24 +0.4
1,231,128 + Psyr_1088 0.24 -0.3
1,231,128 + Psyr_1088 0.24 +0.2
1,231,128 + Psyr_1088 0.24 -0.4
1,231,129 - Psyr_1088 0.24 -1.3
1,231,129 - Psyr_1088 0.24 -2.1
1,231,129 - Psyr_1088 0.24 +0.8
1,231,196 - Psyr_1088 0.33 -0.1
1,231,219 + Psyr_1088 0.36 -0.4
1,231,222 + Psyr_1088 0.37 +0.0
1,231,222 + Psyr_1088 0.37 -1.0
1,231,222 + Psyr_1088 0.37 -1.1
1,231,222 + Psyr_1088 0.37 +0.6
1,231,222 + Psyr_1088 0.37 +0.1
1,231,222 + Psyr_1088 0.37 +0.5
1,231,223 - Psyr_1088 0.37 -1.2
1,231,223 - Psyr_1088 0.37 -1.4
1,231,223 - Psyr_1088 0.37 -1.4
1,231,223 - Psyr_1088 0.37 +1.1
1,231,223 - Psyr_1088 0.37 -0.0
1,231,223 - Psyr_1088 0.37 -0.1
1,231,252 - Psyr_1088 0.41 -2.3
1,231,252 - Psyr_1088 0.41 -0.2
1,231,263 + Psyr_1088 0.42 -0.7
1,231,263 + Psyr_1088 0.42 +0.3
1,231,263 + Psyr_1088 0.42 -0.9
1,231,263 + Psyr_1088 0.42 -0.8
1,231,268 - Psyr_1088 0.43 +0.9
1,231,278 + Psyr_1088 0.44 +0.3
1,231,299 + Psyr_1088 0.47 -0.3
1,231,300 - Psyr_1088 0.47 -0.5
1,231,300 - Psyr_1088 0.47 +0.1
1,231,323 + Psyr_1088 0.51 -1.4
1,231,324 - Psyr_1088 0.51 -1.0
1,231,324 - Psyr_1088 0.51 +1.4
1,231,353 + Psyr_1088 0.55 +0.2
1,231,353 + Psyr_1088 0.55 +0.4
1,231,353 + Psyr_1088 0.55 +0.1
1,231,353 + Psyr_1088 0.55 +0.4
1,231,354 - Psyr_1088 0.55 -0.6
1,231,354 - Psyr_1088 0.55 -0.3
1,231,520 - Psyr_1088 0.77 -0.6
1,231,522 + Psyr_1088 0.78 -0.3
1,231,523 - Psyr_1088 0.78 +2.4

Or see this region's nucleotide sequence