Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1034 and Psyr_1035 are separated by 61 nucleotides Psyr_1035 and Psyr_1036 are separated by 264 nucleotides Psyr_1036 and Psyr_1037 are separated by 898 nucleotides
Psyr_1034: Psyr_1034 - Phosphate-starvation-inducible E, at 1,168,417 to 1,168,905
_1034
Psyr_1035: Psyr_1035 - lipoprotein, putative, at 1,168,967 to 1,169,299
_1035
Psyr_1036: Psyr_1036 - conserved hypothetical protein, at 1,169,564 to 1,169,896
_1036
Psyr_1037: Psyr_1037 - ribosomal subunit interface protein, putative, at 1,170,795 to 1,171,223
_1037
Position (kb) 1169
1170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1168.618 kb on + strand, within Psyr_1034 at 1168.618 kb on + strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.619 kb on - strand, within Psyr_1034 at 1168.649 kb on - strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.687 kb on + strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.688 kb on - strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.765 kb on + strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.766 kb on - strand, within Psyr_1034 at 1168.816 kb on + strand, within Psyr_1034 at 1168.817 kb on - strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.825 kb on + strand, within Psyr_1034 at 1168.826 kb on - strand, within Psyr_1034 at 1168.826 kb on - strand, within Psyr_1034 at 1168.826 kb on - strand, within Psyr_1034 at 1168.831 kb on + strand, within Psyr_1034 at 1168.832 kb on - strand, within Psyr_1034 at 1168.908 kb on + strand at 1168.908 kb on + strand at 1168.908 kb on + strand at 1168.908 kb on + strand at 1168.908 kb on + strand at 1168.909 kb on - strand at 1168.909 kb on - strand at 1168.952 kb on + strand at 1168.952 kb on + strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.954 kb on + strand at 1168.955 kb on - strand at 1168.955 kb on - strand at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.034 kb on + strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.035 kb on - strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.120 kb on + strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.121 kb on - strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.124 kb on + strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.125 kb on - strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.199 kb on + strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.200 kb on - strand, within Psyr_1035 at 1169.231 kb on + strand, within Psyr_1035 at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.291 kb on + strand at 1169.292 kb on - strand at 1169.292 kb on - strand at 1169.292 kb on - strand at 1169.292 kb on - strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.295 kb on + strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.296 kb on - strand at 1169.384 kb on + strand at 1169.384 kb on + strand at 1169.385 kb on - strand at 1169.385 kb on - strand at 1169.385 kb on - strand at 1169.385 kb on - strand at 1169.385 kb on - strand at 1169.385 kb on - strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.394 kb on + strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.395 kb on - strand at 1169.401 kb on - strand at 1169.401 kb on - strand at 1169.401 kb on - strand at 1169.433 kb on + strand at 1169.433 kb on + strand at 1169.434 kb on - strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.437 kb on + strand at 1169.438 kb on - strand at 1169.438 kb on - strand at 1169.438 kb on - strand at 1169.451 kb on - strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.504 kb on + strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.505 kb on - strand at 1169.717 kb on + strand, within Psyr_1036 at 1169.923 kb on + strand at 1169.923 kb on + strand at 1169.923 kb on + strand at 1169.923 kb on + strand at 1169.923 kb on + strand at 1169.923 kb on + strand at 1169.923 kb on + strand at 1169.924 kb on - strand at 1169.924 kb on - strand at 1169.924 kb on - strand at 1169.924 kb on - strand at 1169.940 kb on - strand at 1169.940 kb on - strand at 1169.940 kb on - strand at 1169.940 kb on - strand at 1170.114 kb on + strand at 1170.114 kb on + strand at 1170.114 kb on + strand at 1170.115 kb on - strand at 1170.115 kb on - strand at 1170.117 kb on + strand at 1170.118 kb on - strand at 1170.162 kb on + strand at 1170.163 kb on - strand at 1170.163 kb on - strand at 1170.454 kb on - strand at 1170.454 kb on - strand at 1170.679 kb on + strand at 1170.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 1,168,618 + Psyr_1034 0.41 +0.7 1,168,618 + Psyr_1034 0.41 -1.4 1,168,619 - Psyr_1034 0.41 -0.0 1,168,619 - Psyr_1034 0.41 -0.8 1,168,619 - Psyr_1034 0.41 -0.1 1,168,649 - Psyr_1034 0.47 -0.8 1,168,687 + Psyr_1034 0.55 +0.4 1,168,687 + Psyr_1034 0.55 -0.1 1,168,687 + Psyr_1034 0.55 -0.0 1,168,687 + Psyr_1034 0.55 -0.4 1,168,687 + Psyr_1034 0.55 -0.3 1,168,687 + Psyr_1034 0.55 +0.9 1,168,687 + Psyr_1034 0.55 -0.4 1,168,687 + Psyr_1034 0.55 +2.4 1,168,687 + Psyr_1034 0.55 +0.8 1,168,687 + Psyr_1034 0.55 +0.8 1,168,687 + Psyr_1034 0.55 -1.1 1,168,687 + Psyr_1034 0.55 +0.2 1,168,687 + Psyr_1034 0.55 +2.3 1,168,687 + Psyr_1034 0.55 -0.8 1,168,687 + Psyr_1034 0.55 -0.5 1,168,687 + Psyr_1034 0.55 +0.0 1,168,688 - Psyr_1034 0.55 -1.3 1,168,688 - Psyr_1034 0.55 +0.1 1,168,688 - Psyr_1034 0.55 -0.2 1,168,688 - Psyr_1034 0.55 -1.0 1,168,688 - Psyr_1034 0.55 +0.4 1,168,688 - Psyr_1034 0.55 +1.2 1,168,688 - Psyr_1034 0.55 +1.3 1,168,688 - Psyr_1034 0.55 +0.0 1,168,688 - Psyr_1034 0.55 +0.3 1,168,688 - Psyr_1034 0.55 -0.7 1,168,688 - Psyr_1034 0.55 -0.2 1,168,688 - Psyr_1034 0.55 -0.6 1,168,765 + Psyr_1034 0.71 -0.4 1,168,765 + Psyr_1034 0.71 -0.0 1,168,765 + Psyr_1034 0.71 +0.2 1,168,765 + Psyr_1034 0.71 +1.0 1,168,766 - Psyr_1034 0.71 -1.0 1,168,766 - Psyr_1034 0.71 +1.7 1,168,766 - Psyr_1034 0.71 -0.3 1,168,766 - Psyr_1034 0.71 -1.4 1,168,766 - Psyr_1034 0.71 -0.2 1,168,766 - Psyr_1034 0.71 +0.8 1,168,766 - Psyr_1034 0.71 -1.9 1,168,766 - Psyr_1034 0.71 -0.4 1,168,816 + Psyr_1034 0.82 +0.6 1,168,817 - Psyr_1034 0.82 -1.7 1,168,825 + Psyr_1034 0.83 +0.2 1,168,825 + Psyr_1034 0.83 -1.0 1,168,825 + Psyr_1034 0.83 -0.1 1,168,825 + Psyr_1034 0.83 +0.2 1,168,825 + Psyr_1034 0.83 -0.5 1,168,825 + Psyr_1034 0.83 +0.3 1,168,826 - Psyr_1034 0.84 +0.4 1,168,826 - Psyr_1034 0.84 -0.0 1,168,826 - Psyr_1034 0.84 +0.3 1,168,831 + Psyr_1034 0.85 +0.3 1,168,832 - Psyr_1034 0.85 -0.2 1,168,908 + -0.2 1,168,908 + -2.4 1,168,908 + -0.6 1,168,908 + -0.5 1,168,908 + +0.1 1,168,909 - -0.3 1,168,909 - +2.2 1,168,952 + +0.4 1,168,952 + +1.0 1,168,954 + +1.5 1,168,954 + -1.0 1,168,954 + -1.0 1,168,955 - +0.8 1,168,955 - +0.7 1,169,034 + Psyr_1035 0.20 +2.0 1,169,034 + Psyr_1035 0.20 +0.0 1,169,034 + Psyr_1035 0.20 -0.1 1,169,034 + Psyr_1035 0.20 +0.6 1,169,034 + Psyr_1035 0.20 -0.4 1,169,034 + Psyr_1035 0.20 -0.7 1,169,034 + Psyr_1035 0.20 -1.1 1,169,035 - Psyr_1035 0.20 -1.6 1,169,035 - Psyr_1035 0.20 -0.4 1,169,035 - Psyr_1035 0.20 +0.2 1,169,035 - Psyr_1035 0.20 -1.2 1,169,035 - Psyr_1035 0.20 -0.9 1,169,035 - Psyr_1035 0.20 +0.1 1,169,035 - Psyr_1035 0.20 +0.4 1,169,035 - Psyr_1035 0.20 +0.2 1,169,120 + Psyr_1035 0.46 +0.2 1,169,120 + Psyr_1035 0.46 +0.6 1,169,120 + Psyr_1035 0.46 -0.3 1,169,120 + Psyr_1035 0.46 -0.2 1,169,120 + Psyr_1035 0.46 -1.4 1,169,120 + Psyr_1035 0.46 -0.1 1,169,121 - Psyr_1035 0.46 +0.9 1,169,121 - Psyr_1035 0.46 -0.2 1,169,121 - Psyr_1035 0.46 -0.3 1,169,121 - Psyr_1035 0.46 -0.1 1,169,121 - Psyr_1035 0.46 +0.1 1,169,121 - Psyr_1035 0.46 +0.3 1,169,121 - Psyr_1035 0.46 -0.1 1,169,124 + Psyr_1035 0.47 -0.4 1,169,124 + Psyr_1035 0.47 +1.4 1,169,124 + Psyr_1035 0.47 -1.8 1,169,124 + Psyr_1035 0.47 -0.2 1,169,125 - Psyr_1035 0.47 +0.2 1,169,125 - Psyr_1035 0.47 +0.3 1,169,125 - Psyr_1035 0.47 +0.2 1,169,125 - Psyr_1035 0.47 -0.4 1,169,125 - Psyr_1035 0.47 +1.2 1,169,125 - Psyr_1035 0.47 -0.9 1,169,125 - Psyr_1035 0.47 -0.1 1,169,125 - Psyr_1035 0.47 +1.4 1,169,125 - Psyr_1035 0.47 +0.2 1,169,199 + Psyr_1035 0.70 +1.1 1,169,199 + Psyr_1035 0.70 +0.4 1,169,199 + Psyr_1035 0.70 +0.8 1,169,199 + Psyr_1035 0.70 -0.3 1,169,199 + Psyr_1035 0.70 -0.4 1,169,200 - Psyr_1035 0.70 +0.0 1,169,200 - Psyr_1035 0.70 -0.2 1,169,200 - Psyr_1035 0.70 +0.6 1,169,200 - Psyr_1035 0.70 +0.4 1,169,231 + Psyr_1035 0.79 +1.0 1,169,291 + -0.0 1,169,291 + -1.2 1,169,291 + +0.0 1,169,291 + -0.2 1,169,291 + +0.5 1,169,291 + -0.6 1,169,291 + +0.0 1,169,291 + -0.9 1,169,291 + -0.2 1,169,291 + +0.5 1,169,292 - -1.6 1,169,292 - +1.1 1,169,292 - +0.7 1,169,292 - +0.1 1,169,295 + -0.5 1,169,295 + -1.1 1,169,295 + -0.2 1,169,295 + +2.0 1,169,295 + -0.6 1,169,295 + +0.1 1,169,295 + -0.1 1,169,295 + +0.8 1,169,295 + +0.5 1,169,295 + -0.0 1,169,295 + +0.4 1,169,295 + +0.1 1,169,295 + -0.2 1,169,295 + -2.3 1,169,296 - +0.5 1,169,296 - +0.5 1,169,296 - -0.6 1,169,296 - +1.1 1,169,296 - +0.4 1,169,296 - -0.0 1,169,296 - +1.0 1,169,296 - -0.7 1,169,296 - +0.1 1,169,296 - +0.2 1,169,296 - -0.1 1,169,296 - +0.2 1,169,296 - +0.3 1,169,296 - +1.1 1,169,384 + +0.3 1,169,384 + -1.4 1,169,385 - -0.1 1,169,385 - +0.2 1,169,385 - -2.8 1,169,385 - -0.6 1,169,385 - -0.2 1,169,385 - -0.4 1,169,394 + +0.0 1,169,394 + +1.0 1,169,394 + -0.3 1,169,394 + +0.5 1,169,394 + +0.3 1,169,394 + +1.0 1,169,394 + -0.8 1,169,394 + -0.6 1,169,394 + +0.1 1,169,394 + +0.6 1,169,394 + -0.6 1,169,394 + -0.5 1,169,394 + -0.3 1,169,394 + +0.1 1,169,394 + -0.1 1,169,394 + -0.3 1,169,394 + +1.2 1,169,394 + +0.6 1,169,394 + +0.4 1,169,394 + +0.7 1,169,394 + -0.1 1,169,394 + -0.0 1,169,394 + +0.6 1,169,394 + +0.4 1,169,394 + -1.5 1,169,395 - -1.0 1,169,395 - -0.3 1,169,395 - +0.0 1,169,395 - -0.2 1,169,395 - +0.7 1,169,395 - -2.2 1,169,395 - -0.7 1,169,395 - +0.2 1,169,395 - +0.3 1,169,395 - -0.3 1,169,395 - +0.1 1,169,395 - -0.5 1,169,395 - -0.4 1,169,395 - +0.9 1,169,401 - +0.3 1,169,401 - +0.1 1,169,401 - -0.8 1,169,433 + +0.4 1,169,433 + +0.3 1,169,434 - -3.6 1,169,437 + +0.1 1,169,437 + +0.8 1,169,437 + +0.1 1,169,438 - -0.8 1,169,438 - -1.1 1,169,438 - +0.8 1,169,451 - +2.4 1,169,504 + +0.9 1,169,504 + -1.2 1,169,504 + +0.6 1,169,504 + -0.2 1,169,504 + -0.1 1,169,504 + -1.6 1,169,504 + -0.3 1,169,504 + -0.4 1,169,505 - -2.2 1,169,505 - +0.4 1,169,505 - -1.9 1,169,505 - -2.2 1,169,505 - -1.8 1,169,505 - -0.2 1,169,505 - -1.6 1,169,717 + Psyr_1036 0.46 +0.8 1,169,923 + -0.3 1,169,923 + +0.4 1,169,923 + -0.6 1,169,923 + +0.4 1,169,923 + -0.2 1,169,923 + +0.3 1,169,923 + -0.7 1,169,924 - -0.8 1,169,924 - +0.4 1,169,924 - +0.7 1,169,924 - +0.1 1,169,940 - -0.2 1,169,940 - +0.0 1,169,940 - -0.2 1,169,940 - +0.7 1,170,114 + -0.0 1,170,114 + -0.1 1,170,114 + +0.5 1,170,115 - +0.4 1,170,115 - -0.8 1,170,117 + +0.1 1,170,118 - -0.2 1,170,162 + +0.3 1,170,163 - +2.1 1,170,163 - +1.2 1,170,454 - -0.3 1,170,454 - -0.5 1,170,679 + -0.1 1,170,680 - +0.6
Or see this region's nucleotide sequence