Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0767 and Psyr_0768 are separated by 168 nucleotides Psyr_0768 and Psyr_0769 are separated by 201 nucleotides Psyr_0769 and Psyr_0770 are separated by 14 nucleotides
Psyr_0767: Psyr_0767 - transcriptional regulator, LysR family, at 872,972 to 873,892
_0767
Psyr_0768: Psyr_0768 - conserved hypothetical protein, at 874,061 to 874,216
_0768
Psyr_0769: Psyr_0769 - conserved hypothetical membrane-anchored protein, at 874,418 to 874,861
_0769
Psyr_0770: Psyr_0770 - conserved hypothetical protein, at 874,876 to 875,334
_0770
Position (kb) 874
875 Strain fitness (log2 ratio) -1
0
1
2
3 at 873.312 kb on - strand, within Psyr_0767 at 873.439 kb on + strand, within Psyr_0767 at 873.446 kb on - strand, within Psyr_0767 at 873.753 kb on + strand, within Psyr_0767 at 873.754 kb on - strand, within Psyr_0767 at 873.779 kb on + strand, within Psyr_0767 at 873.779 kb on + strand, within Psyr_0767 at 873.779 kb on + strand, within Psyr_0767 at 873.779 kb on + strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 873.780 kb on - strand, within Psyr_0767 at 874.075 kb on + strand at 874.076 kb on - strand at 874.076 kb on - strand at 874.076 kb on - strand at 874.076 kb on - strand at 874.076 kb on - strand at 874.165 kb on + strand, within Psyr_0768 at 874.214 kb on + strand at 874.214 kb on + strand at 874.215 kb on - strand at 874.431 kb on - strand at 874.440 kb on - strand at 874.440 kb on - strand at 874.440 kb on - strand at 874.658 kb on + strand, within Psyr_0769 at 874.658 kb on + strand, within Psyr_0769 at 874.658 kb on + strand, within Psyr_0769 at 874.659 kb on - strand, within Psyr_0769 at 874.659 kb on - strand, within Psyr_0769 at 874.772 kb on - strand, within Psyr_0769 at 874.772 kb on - strand, within Psyr_0769 at 874.830 kb on + strand at 874.830 kb on + strand at 874.831 kb on - strand at 874.861 kb on + strand at 874.861 kb on + strand at 874.861 kb on + strand at 874.861 kb on + strand at 874.861 kb on + strand at 874.862 kb on - strand at 874.862 kb on - strand at 874.862 kb on - strand at 874.884 kb on - strand at 874.884 kb on - strand at 874.887 kb on + strand at 874.887 kb on + strand at 874.887 kb on + strand at 874.887 kb on + strand at 874.888 kb on - strand at 874.888 kb on - strand at 874.888 kb on - strand at 874.923 kb on + strand, within Psyr_0770 at 874.923 kb on + strand, within Psyr_0770 at 874.923 kb on + strand, within Psyr_0770 at 874.923 kb on + strand, within Psyr_0770 at 874.923 kb on + strand, within Psyr_0770 at 874.924 kb on - strand, within Psyr_0770 at 874.924 kb on - strand, within Psyr_0770 at 874.924 kb on - strand, within Psyr_0770 at 874.924 kb on - strand, within Psyr_0770 at 874.973 kb on + strand, within Psyr_0770 at 874.973 kb on + strand, within Psyr_0770 at 874.973 kb on + strand, within Psyr_0770 at 874.974 kb on - strand, within Psyr_0770 at 874.984 kb on + strand, within Psyr_0770 at 875.075 kb on - strand, within Psyr_0770 at 875.183 kb on + strand, within Psyr_0770 at 875.183 kb on + strand, within Psyr_0770 at 875.184 kb on - strand, within Psyr_0770 at 875.184 kb on - strand, within Psyr_0770
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 873,312 - Psyr_0767 0.37 +2.0 873,439 + Psyr_0767 0.51 +0.4 873,446 - Psyr_0767 0.51 -0.6 873,753 + Psyr_0767 0.85 +0.1 873,754 - Psyr_0767 0.85 -0.8 873,779 + Psyr_0767 0.88 +0.2 873,779 + Psyr_0767 0.88 +1.1 873,779 + Psyr_0767 0.88 +0.3 873,779 + Psyr_0767 0.88 -0.7 873,780 - Psyr_0767 0.88 -1.1 873,780 - Psyr_0767 0.88 +0.7 873,780 - Psyr_0767 0.88 -0.9 873,780 - Psyr_0767 0.88 +0.5 873,780 - Psyr_0767 0.88 -0.9 873,780 - Psyr_0767 0.88 +0.3 873,780 - Psyr_0767 0.88 -0.4 873,780 - Psyr_0767 0.88 +0.9 873,780 - Psyr_0767 0.88 +0.3 874,075 + -0.7 874,076 - +1.2 874,076 - +0.4 874,076 - +1.2 874,076 - +0.3 874,076 - -0.0 874,165 + Psyr_0768 0.67 +1.5 874,214 + +0.4 874,214 + +2.4 874,215 - +1.4 874,431 - +0.3 874,440 - -0.2 874,440 - -0.2 874,440 - -0.4 874,658 + Psyr_0769 0.54 -0.6 874,658 + Psyr_0769 0.54 +0.5 874,658 + Psyr_0769 0.54 -0.2 874,659 - Psyr_0769 0.54 +0.5 874,659 - Psyr_0769 0.54 -0.6 874,772 - Psyr_0769 0.80 -0.9 874,772 - Psyr_0769 0.80 +1.2 874,830 + -1.2 874,830 + -0.6 874,831 - +0.1 874,861 + +3.7 874,861 + -0.7 874,861 + -0.8 874,861 + +0.5 874,861 + -0.8 874,862 - -1.1 874,862 - +0.2 874,862 - +0.1 874,884 - -0.1 874,884 - +0.7 874,887 + +0.8 874,887 + +0.3 874,887 + -0.1 874,887 + -0.2 874,888 - -0.6 874,888 - -0.9 874,888 - +0.9 874,923 + Psyr_0770 0.10 -0.3 874,923 + Psyr_0770 0.10 +0.2 874,923 + Psyr_0770 0.10 +0.5 874,923 + Psyr_0770 0.10 -1.0 874,923 + Psyr_0770 0.10 +1.4 874,924 - Psyr_0770 0.10 +0.4 874,924 - Psyr_0770 0.10 -0.4 874,924 - Psyr_0770 0.10 +0.8 874,924 - Psyr_0770 0.10 -0.8 874,973 + Psyr_0770 0.21 +0.5 874,973 + Psyr_0770 0.21 -0.5 874,973 + Psyr_0770 0.21 -0.1 874,974 - Psyr_0770 0.21 -0.1 874,984 + Psyr_0770 0.24 +1.2 875,075 - Psyr_0770 0.43 -0.5 875,183 + Psyr_0770 0.67 +0.2 875,183 + Psyr_0770 0.67 -0.2 875,184 - Psyr_0770 0.67 +0.8 875,184 - Psyr_0770 0.67 +0.6
Or see this region's nucleotide sequence