Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0723 and Psyr_0724 overlap by 11 nucleotides Psyr_0724 and Psyr_0725 are separated by 120 nucleotides Psyr_0725 and Psyr_0726 are separated by 149 nucleotides
Psyr_0723: Psyr_0723 - Sensor protein PilS, at 827,353 to 828,945
_0723
Psyr_0724: Psyr_0724 - conserved hypothetical protein, at 828,935 to 829,174
_0724
Psyr_0725: Psyr_0725 - competence lipoprotein ComL, putative, at 829,295 to 830,317
_0725
Psyr_0726: Psyr_0726 - ribosomal large subunit pseudouridine synthase D, at 830,467 to 831,429
_0726
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.401 kb on - strand, within Psyr_0723 at 828.401 kb on - strand, within Psyr_0723 at 828.489 kb on - strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.662 kb on + strand, within Psyr_0723 at 828.662 kb on + strand, within Psyr_0723 at 828.668 kb on - strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.878 kb on + strand at 828.887 kb on + strand at 828.887 kb on + strand at 828.887 kb on + strand at 828.888 kb on - strand at 828.888 kb on - strand at 828.888 kb on - strand at 828.895 kb on + strand at 828.895 kb on + strand at 828.896 kb on - strand at 828.984 kb on + strand, within Psyr_0724 at 828.984 kb on + strand, within Psyr_0724 at 828.985 kb on - strand, within Psyr_0724 at 828.985 kb on - strand, within Psyr_0724 at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.163 kb on + strand at 829.163 kb on + strand at 829.163 kb on + strand at 829.164 kb on - strand at 829.164 kb on - strand at 829.164 kb on - strand at 829.186 kb on + strand at 829.209 kb on + strand at 829.245 kb on - strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.599 kb on + strand, within Psyr_0725 at 830.370 kb on - strand at 830.370 kb on - strand at 830.412 kb on - strand at 830.457 kb on + strand at 830.457 kb on + strand at 830.457 kb on + strand at 830.458 kb on - strand at 830.458 kb on - strand at 830.458 kb on - strand at 830.458 kb on - strand at 830.458 kb on - strand at 830.479 kb on - strand at 830.479 kb on - strand at 830.480 kb on + strand at 830.481 kb on - strand at 830.481 kb on - strand at 830.481 kb on - strand at 830.546 kb on + strand at 830.546 kb on + strand at 830.547 kb on - strand at 830.726 kb on - strand, within Psyr_0726 at 830.970 kb on + strand, within Psyr_0726 at 830.970 kb on + strand, within Psyr_0726 at 830.971 kb on - strand, within Psyr_0726 at 830.971 kb on - strand, within Psyr_0726 at 830.974 kb on + strand, within Psyr_0726 at 830.974 kb on + strand, within Psyr_0726 at 830.974 kb on + strand, within Psyr_0726 at 830.974 kb on + strand, within Psyr_0726 at 830.975 kb on - strand, within Psyr_0726 at 830.975 kb on - strand, within Psyr_0726 at 830.975 kb on - strand, within Psyr_0726 at 830.975 kb on - strand, within Psyr_0726 at 831.134 kb on + strand, within Psyr_0726 at 831.134 kb on + strand, within Psyr_0726 at 831.135 kb on - strand, within Psyr_0726 at 831.135 kb on - strand, within Psyr_0726 at 831.135 kb on - strand, within Psyr_0726 at 831.176 kb on + strand, within Psyr_0726
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 828,401 - Psyr_0723 0.66 -0.1 828,401 - Psyr_0723 0.66 -0.1 828,489 - Psyr_0723 0.71 +0.6 828,524 + Psyr_0723 0.74 +0.0 828,524 + Psyr_0723 0.74 -0.7 828,524 + Psyr_0723 0.74 -0.7 828,524 + Psyr_0723 0.74 +0.5 828,524 + Psyr_0723 0.74 +0.4 828,524 + Psyr_0723 0.74 +0.3 828,525 - Psyr_0723 0.74 -1.1 828,525 - Psyr_0723 0.74 +0.1 828,525 - Psyr_0723 0.74 +1.0 828,525 - Psyr_0723 0.74 +0.9 828,525 - Psyr_0723 0.74 +0.2 828,525 - Psyr_0723 0.74 -0.8 828,525 - Psyr_0723 0.74 -0.9 828,525 - Psyr_0723 0.74 -1.0 828,525 - Psyr_0723 0.74 -0.4 828,525 - Psyr_0723 0.74 -0.4 828,525 - Psyr_0723 0.74 -0.2 828,536 + Psyr_0723 0.74 -0.1 828,536 + Psyr_0723 0.74 +0.5 828,536 + Psyr_0723 0.74 -0.1 828,536 + Psyr_0723 0.74 +0.2 828,536 + Psyr_0723 0.74 -0.4 828,536 + Psyr_0723 0.74 -1.1 828,537 - Psyr_0723 0.74 +0.1 828,537 - Psyr_0723 0.74 +1.0 828,537 - Psyr_0723 0.74 -0.1 828,537 - Psyr_0723 0.74 +0.7 828,537 - Psyr_0723 0.74 -0.8 828,537 - Psyr_0723 0.74 -1.3 828,537 - Psyr_0723 0.74 -0.1 828,537 - Psyr_0723 0.74 -0.2 828,537 - Psyr_0723 0.74 -0.2 828,662 + Psyr_0723 0.82 +0.3 828,662 + Psyr_0723 0.82 +0.8 828,668 - Psyr_0723 0.83 +1.1 828,770 + Psyr_0723 0.89 +0.4 828,770 + Psyr_0723 0.89 -2.4 828,770 + Psyr_0723 0.89 +0.9 828,770 + Psyr_0723 0.89 -1.6 828,770 + Psyr_0723 0.89 +0.7 828,770 + Psyr_0723 0.89 +0.6 828,771 - Psyr_0723 0.89 -1.8 828,771 - Psyr_0723 0.89 -1.2 828,771 - Psyr_0723 0.89 -0.7 828,771 - Psyr_0723 0.89 -0.1 828,771 - Psyr_0723 0.89 -0.5 828,856 + -0.6 828,856 + -0.2 828,856 + -2.6 828,856 + +0.7 828,856 + -1.1 828,857 - -2.6 828,857 - +3.0 828,857 - -0.6 828,857 - +0.8 828,857 - +1.3 828,878 + -0.6 828,887 + +1.2 828,887 + +1.1 828,887 + -0.5 828,888 - -0.1 828,888 - +1.4 828,888 - -0.2 828,895 + +1.2 828,895 + +0.3 828,896 - +1.6 828,984 + Psyr_0724 0.20 +0.0 828,984 + Psyr_0724 0.20 +0.1 828,985 - Psyr_0724 0.21 -2.0 828,985 - Psyr_0724 0.21 -0.4 829,159 + +0.7 829,159 + +0.7 829,159 + +0.3 829,159 + +0.1 829,159 + -0.1 829,159 + +0.3 829,159 + -0.3 829,159 + -0.2 829,159 + +0.4 829,159 + -0.5 829,159 + +0.8 829,159 + +0.2 829,159 + -0.2 829,159 + +0.8 829,159 + -1.7 829,159 + -0.6 829,159 + +0.7 829,159 + -0.5 829,159 + -0.4 829,159 + +0.7 829,160 - -0.7 829,160 - +0.2 829,160 - +0.1 829,160 - +0.2 829,160 - -0.3 829,160 - +0.4 829,160 - +0.4 829,160 - -0.2 829,160 - -0.1 829,160 - -0.7 829,160 - +2.4 829,160 - -2.0 829,160 - +0.9 829,160 - -0.8 829,160 - -0.7 829,160 - -0.6 829,160 - -0.2 829,160 - -0.0 829,160 - +1.2 829,163 + -0.5 829,163 + +0.3 829,163 + -0.2 829,164 - +0.4 829,164 - +0.0 829,164 - -0.5 829,186 + +0.1 829,209 + -0.4 829,245 - -0.6 829,320 + -0.7 829,320 + -0.5 829,320 + -0.3 829,320 + -2.3 829,320 + -1.2 829,320 + -0.9 829,320 + -0.4 829,320 + -0.6 829,320 + +1.1 829,320 + -1.8 829,320 + -0.3 829,321 - -0.2 829,321 - +1.1 829,321 - +0.7 829,321 - +0.3 829,321 - +1.6 829,321 - +0.1 829,321 - -0.6 829,321 - -0.4 829,321 - -0.3 829,321 - +0.2 829,321 - -0.7 829,321 - -0.3 829,599 + Psyr_0725 0.30 -0.6 830,370 - -1.2 830,370 - -0.1 830,412 - +0.5 830,457 + -0.1 830,457 + -0.5 830,457 + +0.6 830,458 - -0.1 830,458 - -0.7 830,458 - +0.2 830,458 - +0.2 830,458 - +0.3 830,479 - +0.2 830,479 - +0.3 830,480 + -0.7 830,481 - -0.8 830,481 - +1.0 830,481 - +0.4 830,546 + -0.4 830,546 + -0.9 830,547 - -0.2 830,726 - Psyr_0726 0.27 +0.4 830,970 + Psyr_0726 0.52 +1.4 830,970 + Psyr_0726 0.52 +0.4 830,971 - Psyr_0726 0.52 +0.8 830,971 - Psyr_0726 0.52 +0.5 830,974 + Psyr_0726 0.53 +0.3 830,974 + Psyr_0726 0.53 -0.2 830,974 + Psyr_0726 0.53 -0.3 830,974 + Psyr_0726 0.53 +0.3 830,975 - Psyr_0726 0.53 -0.1 830,975 - Psyr_0726 0.53 -0.1 830,975 - Psyr_0726 0.53 -0.0 830,975 - Psyr_0726 0.53 +1.2 831,134 + Psyr_0726 0.69 +0.9 831,134 + Psyr_0726 0.69 +1.3 831,135 - Psyr_0726 0.69 +0.7 831,135 - Psyr_0726 0.69 +0.2 831,135 - Psyr_0726 0.69 +0.1 831,176 + Psyr_0726 0.74 -1.1
Or see this region's nucleotide sequence