Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0577

Experiment: KB with Aristolochic Acid 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0576 and Psyr_0577 are separated by 54 nucleotidesPsyr_0577 and Psyr_0578 are separated by 171 nucleotides Psyr_0576: Psyr_0576 - ATP phosphoribosyltransferase regulatory subunit, putative, at 654,632 to 655,819 _0576 Psyr_0577: Psyr_0577 - Adenylosuccinate synthetase, at 655,874 to 657,166 _0577 Psyr_0578: Psyr_0578 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 657,338 to 659,272 _0578 Position (kb) 655 656 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 654.901 kb on + strand, within Psyr_0576at 655.005 kb on + strand, within Psyr_0576at 655.421 kb on + strand, within Psyr_0576at 655.421 kb on + strand, within Psyr_0576at 655.421 kb on + strand, within Psyr_0576at 655.454 kb on + strand, within Psyr_0576at 657.167 kb on + strandat 657.167 kb on + strandat 657.167 kb on + strandat 657.167 kb on + strandat 657.168 kb on - strandat 657.168 kb on - strandat 657.278 kb on + strandat 657.278 kb on + strandat 657.278 kb on + strandat 657.279 kb on - strandat 657.279 kb on - strandat 657.279 kb on - strandat 657.351 kb on + strandat 657.351 kb on + strandat 657.351 kb on + strandat 657.351 kb on + strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.352 kb on - strandat 657.493 kb on - strandat 657.602 kb on - strand, within Psyr_0578at 657.774 kb on + strand, within Psyr_0578at 657.774 kb on + strand, within Psyr_0578at 657.774 kb on + strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.775 kb on - strand, within Psyr_0578at 657.788 kb on + strand, within Psyr_0578at 657.814 kb on + strand, within Psyr_0578at 657.815 kb on - strand, within Psyr_0578at 657.821 kb on + strand, within Psyr_0578at 657.822 kb on - strand, within Psyr_0578at 657.822 kb on - strand, within Psyr_0578at 657.822 kb on - strand, within Psyr_0578at 657.822 kb on - strand, within Psyr_0578at 657.822 kb on - strand, within Psyr_0578at 657.926 kb on + strand, within Psyr_0578at 657.926 kb on + strand, within Psyr_0578at 657.926 kb on + strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.927 kb on - strand, within Psyr_0578at 657.929 kb on + strand, within Psyr_0578at 657.930 kb on - strand, within Psyr_0578at 657.930 kb on - strand, within Psyr_0578at 657.930 kb on - strand, within Psyr_0578at 657.930 kb on - strand, within Psyr_0578at 657.987 kb on + strand, within Psyr_0578at 657.988 kb on - strand, within Psyr_0578

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
remove
654,901 + Psyr_0576 0.23 +0.8
655,005 + Psyr_0576 0.31 -0.5
655,421 + Psyr_0576 0.66 -0.5
655,421 + Psyr_0576 0.66 +0.6
655,421 + Psyr_0576 0.66 -1.5
655,454 + Psyr_0576 0.69 -0.6
657,167 + +0.1
657,167 + +1.2
657,167 + -0.2
657,167 + -0.5
657,168 - -0.9
657,168 - -1.3
657,278 + -0.0
657,278 + -0.7
657,278 + +0.1
657,279 - +0.7
657,279 - +0.8
657,279 - -0.3
657,351 + -0.2
657,351 + -0.1
657,351 + +0.6
657,351 + -0.4
657,352 - +4.0
657,352 - +0.9
657,352 - -1.0
657,352 - +0.7
657,352 - -1.0
657,352 - -3.1
657,352 - -0.4
657,352 - +0.2
657,352 - +0.6
657,352 - -1.4
657,352 - +0.8
657,493 - +0.5
657,602 - Psyr_0578 0.14 +0.5
657,774 + Psyr_0578 0.23 +0.2
657,774 + Psyr_0578 0.23 -0.1
657,774 + Psyr_0578 0.23 +0.1
657,775 - Psyr_0578 0.23 -0.0
657,775 - Psyr_0578 0.23 +1.0
657,775 - Psyr_0578 0.23 -0.3
657,775 - Psyr_0578 0.23 -0.5
657,775 - Psyr_0578 0.23 -0.3
657,775 - Psyr_0578 0.23 -0.1
657,775 - Psyr_0578 0.23 +0.9
657,775 - Psyr_0578 0.23 -1.1
657,775 - Psyr_0578 0.23 +0.1
657,775 - Psyr_0578 0.23 -0.0
657,775 - Psyr_0578 0.23 -0.9
657,788 + Psyr_0578 0.23 -0.6
657,814 + Psyr_0578 0.25 +0.0
657,815 - Psyr_0578 0.25 +0.0
657,821 + Psyr_0578 0.25 +0.6
657,822 - Psyr_0578 0.25 -0.0
657,822 - Psyr_0578 0.25 -2.9
657,822 - Psyr_0578 0.25 +0.1
657,822 - Psyr_0578 0.25 +0.5
657,822 - Psyr_0578 0.25 -0.7
657,926 + Psyr_0578 0.30 -0.0
657,926 + Psyr_0578 0.30 +0.1
657,926 + Psyr_0578 0.30 -1.1
657,927 - Psyr_0578 0.30 -0.3
657,927 - Psyr_0578 0.30 -1.3
657,927 - Psyr_0578 0.30 -0.6
657,927 - Psyr_0578 0.30 +0.6
657,927 - Psyr_0578 0.30 +0.5
657,927 - Psyr_0578 0.30 -1.1
657,927 - Psyr_0578 0.30 +0.4
657,927 - Psyr_0578 0.30 -0.6
657,929 + Psyr_0578 0.31 +0.9
657,930 - Psyr_0578 0.31 +0.6
657,930 - Psyr_0578 0.31 +0.1
657,930 - Psyr_0578 0.31 -0.7
657,930 - Psyr_0578 0.31 -0.5
657,987 + Psyr_0578 0.34 +0.8
657,988 - Psyr_0578 0.34 -1.4

Or see this region's nucleotide sequence