Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0530

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0529 and Psyr_0530 overlap by 1 nucleotidesPsyr_0530 and Psyr_0531 overlap by 4 nucleotides Psyr_0529: Psyr_0529 - Glycosyl transferase, group 1, at 597,719 to 598,849 _0529 Psyr_0530: Psyr_0530 - Mig-14, at 598,849 to 599,745 _0530 Psyr_0531: Psyr_0531 - LmbE-like protein, at 599,742 to 601,151 _0531 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1at 597.912 kb on - strand, within Psyr_0529at 597.912 kb on - strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.022 kb on + strand, within Psyr_0529at 598.023 kb on - strand, within Psyr_0529at 598.023 kb on - strand, within Psyr_0529at 598.023 kb on - strand, within Psyr_0529at 598.026 kb on + strand, within Psyr_0529at 598.026 kb on + strand, within Psyr_0529at 598.217 kb on + strand, within Psyr_0529at 598.517 kb on + strand, within Psyr_0529at 598.517 kb on + strand, within Psyr_0529at 598.685 kb on - strand, within Psyr_0529at 598.799 kb on - strandat 599.218 kb on - strand, within Psyr_0530at 599.917 kb on - strand, within Psyr_0531at 599.941 kb on - strand, within Psyr_0531at 600.013 kb on + strand, within Psyr_0531at 600.014 kb on - strand, within Psyr_0531

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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597,912 - Psyr_0529 0.17 +0.2
597,912 - Psyr_0529 0.17 +0.7
598,022 + Psyr_0529 0.27 -1.3
598,022 + Psyr_0529 0.27 +0.1
598,022 + Psyr_0529 0.27 +1.5
598,022 + Psyr_0529 0.27 -2.3
598,022 + Psyr_0529 0.27 -2.6
598,022 + Psyr_0529 0.27 -0.8
598,022 + Psyr_0529 0.27 -2.1
598,022 + Psyr_0529 0.27 -1.6
598,023 - Psyr_0529 0.27 -1.0
598,023 - Psyr_0529 0.27 +0.6
598,023 - Psyr_0529 0.27 -0.5
598,026 + Psyr_0529 0.27 +0.2
598,026 + Psyr_0529 0.27 -2.0
598,217 + Psyr_0529 0.44 -1.7
598,517 + Psyr_0529 0.71 -0.4
598,517 + Psyr_0529 0.71 -1.2
598,685 - Psyr_0529 0.85 +1.5
598,799 - +1.1
599,218 - Psyr_0530 0.41 -1.3
599,917 - Psyr_0531 0.12 -0.7
599,941 - Psyr_0531 0.14 +1.5
600,013 + Psyr_0531 0.19 -0.2
600,014 - Psyr_0531 0.19 -1.3

Or see this region's nucleotide sequence