Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0516 and Psyr_0517 are separated by 277 nucleotides Psyr_0517 and Psyr_0518 are separated by 142 nucleotides
Psyr_0516: Psyr_0516 - ATP-dependent RNA helicase DbpA, at 572,766 to 574,187
_0516
Psyr_0517: Psyr_0517 - Dihydrolipoamide acetyltransferase, at 574,465 to 576,138
_0517
Psyr_0518: Psyr_0518 - 2-oxo-acid dehydrogenase E1 component homodimeric type, at 576,281 to 578,926
_0518
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -2
-1
0
1
2 at 573.652 kb on + strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.653 kb on - strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.744 kb on + strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.745 kb on - strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.746 kb on + strand, within Psyr_0516 at 573.747 kb on - strand, within Psyr_0516 at 574.177 kb on + strand at 574.178 kb on - strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.182 kb on + strand at 574.183 kb on - strand at 574.252 kb on + strand at 574.252 kb on + strand at 574.253 kb on - strand at 574.253 kb on - strand at 574.429 kb on + strand at 574.429 kb on + strand at 574.430 kb on - strand at 574.430 kb on - strand at 574.430 kb on - strand at 576.190 kb on - strand at 576.190 kb on - strand at 576.218 kb on - strand at 576.218 kb on - strand at 576.250 kb on - strand at 576.250 kb on - strand at 576.589 kb on - strand, within Psyr_0518
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 573,652 + Psyr_0516 0.62 +0.6 573,653 - Psyr_0516 0.62 +1.1 573,653 - Psyr_0516 0.62 +0.1 573,653 - Psyr_0516 0.62 -0.3 573,744 + Psyr_0516 0.69 -0.3 573,744 + Psyr_0516 0.69 +1.8 573,744 + Psyr_0516 0.69 +0.0 573,744 + Psyr_0516 0.69 -0.1 573,744 + Psyr_0516 0.69 +0.1 573,744 + Psyr_0516 0.69 +0.1 573,745 - Psyr_0516 0.69 +0.2 573,745 - Psyr_0516 0.69 -0.4 573,745 - Psyr_0516 0.69 -0.1 573,745 - Psyr_0516 0.69 +0.4 573,746 + Psyr_0516 0.69 -0.4 573,746 + Psyr_0516 0.69 +0.7 573,746 + Psyr_0516 0.69 -1.0 573,747 - Psyr_0516 0.69 -0.7 574,177 + +0.2 574,178 - -1.0 574,182 + +0.2 574,182 + +0.5 574,182 + +0.2 574,182 + +0.4 574,183 - +0.7 574,252 + -0.2 574,252 + +1.0 574,253 - -0.8 574,253 - -0.2 574,429 + -0.9 574,429 + +1.3 574,430 - +0.9 574,430 - -0.6 574,430 - +1.1 576,190 - -1.4 576,190 - -0.6 576,218 - -1.3 576,218 - -1.8 576,250 - -0.5 576,250 - +0.1 576,589 - Psyr_0518 0.12 -1.3
Or see this region's nucleotide sequence