Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0482

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0481 and Psyr_0482 overlap by 4 nucleotidesPsyr_0482 and Psyr_0483 are separated by 12 nucleotidesPsyr_0483 and Psyr_0484 are separated by 98 nucleotides Psyr_0481: Psyr_0481 - dihydroorotase, at 519,207 to 520,478 _0481 Psyr_0482: Psyr_0482 - aspartate carbamoyltransferase, at 520,475 to 521,479 _0482 Psyr_0483: Psyr_0483 - Uracil phosphoribosyltransferase, at 521,492 to 522,004 _0483 Psyr_0484: Psyr_0484 - Conserved hypothetical protein 250, at 522,103 to 522,543 _0484 Position (kb) 520 521 522Strain fitness (log2 ratio) -1 0 1at 519.798 kb on + strand, within Psyr_0481at 521.702 kb on - strand, within Psyr_0483at 522.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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519,798 + Psyr_0481 0.46 +0.0
521,702 - Psyr_0483 0.41 +0.6
522,015 + +0.0

Or see this region's nucleotide sequence