Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0429 and Psyr_0430 overlap by 29 nucleotides Psyr_0430 and Psyr_0431 overlap by 4 nucleotides Psyr_0431 and Psyr_0432 are separated by 54 nucleotides
Psyr_0429: Psyr_0429 - membrane protein, putative, at 467,655 to 470,030
_0429
Psyr_0430: Psyr_0430 - conserved hypothetical protein, at 470,002 to 470,616
_0430
Psyr_0431: Psyr_0431 - Thioesterase superfamily, at 470,613 to 471,062
_0431
Psyr_0432: Psyr_0432 - conserved hypothetical protein, at 471,117 to 472,064
_0432
Position (kb) 470
471 Strain fitness (log2 ratio) -2
-1
0
1
2 at 469.048 kb on + strand, within Psyr_0429 at 469.048 kb on + strand, within Psyr_0429 at 469.049 kb on - strand, within Psyr_0429 at 469.049 kb on - strand, within Psyr_0429 at 469.049 kb on - strand, within Psyr_0429 at 469.049 kb on - strand, within Psyr_0429 at 469.298 kb on - strand, within Psyr_0429 at 469.298 kb on - strand, within Psyr_0429 at 469.443 kb on - strand, within Psyr_0429 at 469.597 kb on - strand, within Psyr_0429 at 469.959 kb on + strand at 469.960 kb on - strand at 470.632 kb on - strand at 470.632 kb on - strand at 470.729 kb on + strand, within Psyr_0431 at 470.730 kb on - strand, within Psyr_0431 at 470.858 kb on - strand, within Psyr_0431 at 470.858 kb on - strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.914 kb on + strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.915 kb on - strand, within Psyr_0431 at 470.918 kb on + strand, within Psyr_0431 at 470.918 kb on + strand, within Psyr_0431 at 470.919 kb on - strand, within Psyr_0431 at 470.919 kb on - strand, within Psyr_0431 at 470.919 kb on - strand, within Psyr_0431 at 470.962 kb on + strand, within Psyr_0431 at 470.962 kb on + strand, within Psyr_0431 at 470.962 kb on + strand, within Psyr_0431 at 470.971 kb on + strand, within Psyr_0431 at 470.971 kb on + strand, within Psyr_0431 at 470.972 kb on - strand, within Psyr_0431 at 470.972 kb on - strand, within Psyr_0431 at 470.972 kb on - strand, within Psyr_0431 at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.064 kb on + strand at 471.065 kb on - strand at 471.065 kb on - strand at 471.065 kb on - strand at 471.093 kb on + strand at 471.093 kb on + strand at 471.093 kb on + strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand at 471.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 469,048 + Psyr_0429 0.59 +0.5 469,048 + Psyr_0429 0.59 +0.7 469,049 - Psyr_0429 0.59 +0.1 469,049 - Psyr_0429 0.59 -0.3 469,049 - Psyr_0429 0.59 -0.5 469,049 - Psyr_0429 0.59 -0.1 469,298 - Psyr_0429 0.69 +0.2 469,298 - Psyr_0429 0.69 +0.7 469,443 - Psyr_0429 0.75 +1.1 469,597 - Psyr_0429 0.82 -0.3 469,959 + -0.8 469,960 - -0.7 470,632 - +0.3 470,632 - -0.1 470,729 + Psyr_0431 0.26 +0.6 470,730 - Psyr_0431 0.26 +1.5 470,858 - Psyr_0431 0.54 +0.6 470,858 - Psyr_0431 0.54 -0.1 470,914 + Psyr_0431 0.67 -0.8 470,914 + Psyr_0431 0.67 +0.3 470,914 + Psyr_0431 0.67 +0.9 470,914 + Psyr_0431 0.67 -0.7 470,914 + Psyr_0431 0.67 -0.7 470,914 + Psyr_0431 0.67 +0.4 470,914 + Psyr_0431 0.67 +0.0 470,914 + Psyr_0431 0.67 -0.3 470,914 + Psyr_0431 0.67 -0.4 470,914 + Psyr_0431 0.67 -0.5 470,914 + Psyr_0431 0.67 -2.2 470,914 + Psyr_0431 0.67 +0.0 470,914 + Psyr_0431 0.67 +0.2 470,914 + Psyr_0431 0.67 +0.3 470,914 + Psyr_0431 0.67 -0.1 470,914 + Psyr_0431 0.67 +0.4 470,914 + Psyr_0431 0.67 +1.1 470,914 + Psyr_0431 0.67 -1.3 470,914 + Psyr_0431 0.67 -0.1 470,915 - Psyr_0431 0.67 -0.2 470,915 - Psyr_0431 0.67 +1.1 470,915 - Psyr_0431 0.67 +0.6 470,915 - Psyr_0431 0.67 -1.5 470,915 - Psyr_0431 0.67 -0.4 470,915 - Psyr_0431 0.67 -0.9 470,915 - Psyr_0431 0.67 +0.4 470,915 - Psyr_0431 0.67 -1.9 470,915 - Psyr_0431 0.67 -0.0 470,915 - Psyr_0431 0.67 +0.3 470,918 + Psyr_0431 0.68 -0.7 470,918 + Psyr_0431 0.68 +0.1 470,919 - Psyr_0431 0.68 -1.5 470,919 - Psyr_0431 0.68 +0.6 470,919 - Psyr_0431 0.68 +0.3 470,962 + Psyr_0431 0.78 +1.8 470,962 + Psyr_0431 0.78 +0.2 470,962 + Psyr_0431 0.78 +0.3 470,971 + Psyr_0431 0.80 -0.9 470,971 + Psyr_0431 0.80 -1.3 470,972 - Psyr_0431 0.80 +0.8 470,972 - Psyr_0431 0.80 +0.5 470,972 - Psyr_0431 0.80 -1.5 471,064 + -1.1 471,064 + -0.6 471,064 + -1.4 471,064 + +1.1 471,064 + -0.8 471,065 - -0.6 471,065 - -0.2 471,065 - -1.9 471,093 + -0.2 471,093 + -0.4 471,093 + +0.7 471,094 - -0.4 471,094 - -0.8 471,094 - -0.0 471,094 - -0.0 471,094 - +0.2
Or see this region's nucleotide sequence