Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0269

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0267 and Psyr_0268 are separated by 9 nucleotidesPsyr_0268 and Psyr_0269 are separated by 221 nucleotidesPsyr_0269 and Psyr_0270 are separated by 241 nucleotides Psyr_0267: Psyr_0267 - Endonuclease/exonuclease/phosphatase, at 284,990 to 285,865 _0267 Psyr_0268: Psyr_0268 - DSBA oxidoreductase, at 285,875 to 286,519 _0268 Psyr_0269: Psyr_0269 - cell division checkpoint GTPase YihA, at 286,741 to 287,448 _0269 Psyr_0270: Psyr_0270 - DNA polymerase I, at 287,690 to 290,455 _0270 Position (kb) 286 287 288Strain fitness (log2 ratio) -2 -1 0 1at 285.876 kb on + strandat 285.876 kb on + strandat 285.877 kb on - strandat 285.877 kb on - strandat 285.877 kb on - strandat 285.975 kb on + strand, within Psyr_0268at 286.178 kb on + strand, within Psyr_0268at 286.425 kb on + strand, within Psyr_0268at 286.426 kb on - strand, within Psyr_0268at 286.426 kb on - strand, within Psyr_0268at 286.426 kb on - strand, within Psyr_0268at 286.468 kb on + strandat 286.513 kb on + strandat 286.592 kb on + strandat 286.598 kb on - strandat 286.611 kb on + strandat 286.644 kb on + strandat 286.644 kb on + strandat 286.701 kb on + strandat 286.701 kb on + strandat 286.738 kb on + strandat 286.738 kb on + strandat 286.738 kb on + strandat 286.738 kb on + strandat 286.738 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.740 kb on + strandat 286.741 kb on + strandat 287.446 kb on + strandat 287.446 kb on + strandat 287.504 kb on + strandat 287.504 kb on + strandat 287.505 kb on - strandat 287.548 kb on + strandat 287.548 kb on + strandat 287.548 kb on + strandat 287.548 kb on + strandat 287.549 kb on - strandat 287.549 kb on - strandat 287.549 kb on - strandat 287.549 kb on - strandat 287.549 kb on - strandat 287.549 kb on - strandat 287.557 kb on + strandat 287.557 kb on + strandat 287.557 kb on + strandat 287.557 kb on + strandat 287.557 kb on + strandat 287.557 kb on + strandat 287.557 kb on + strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.558 kb on - strandat 287.614 kb on - strandat 287.647 kb on + strandat 287.652 kb on + strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.730 kb on - strandat 287.730 kb on - strandat 287.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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285,876 + -1.3
285,876 + -0.1
285,877 - +0.0
285,877 - -0.3
285,877 - -0.5
285,975 + Psyr_0268 0.16 +1.4
286,178 + Psyr_0268 0.47 -1.5
286,425 + Psyr_0268 0.85 -1.6
286,426 - Psyr_0268 0.85 +0.9
286,426 - Psyr_0268 0.85 -0.8
286,426 - Psyr_0268 0.85 +0.7
286,468 + +1.3
286,513 + +1.1
286,592 + -0.7
286,598 - +0.1
286,611 + -1.3
286,644 + +0.8
286,644 + +1.0
286,701 + +0.2
286,701 + +0.9
286,738 + -0.4
286,738 + -0.1
286,738 + +0.3
286,738 + +0.5
286,738 + +0.2
286,740 + -0.7
286,740 + +0.8
286,740 + +0.1
286,740 + -0.1
286,740 + +0.1
286,740 + -0.1
286,740 + +1.0
286,740 + -0.0
286,741 + -0.3
287,446 + -0.3
287,446 + -1.1
287,504 + +0.4
287,504 + +0.1
287,505 - +0.8
287,548 + -0.3
287,548 + -0.8
287,548 + -1.0
287,548 + -1.2
287,549 - +0.6
287,549 - -1.1
287,549 - +1.2
287,549 - -0.0
287,549 - +0.2
287,549 - +0.3
287,557 + +0.5
287,557 + -0.9
287,557 + +0.7
287,557 + -0.0
287,557 + +0.3
287,557 + -2.6
287,557 + -0.0
287,558 - -0.0
287,558 - +0.8
287,558 - -0.0
287,558 - +0.2
287,558 - -0.4
287,614 - +0.6
287,647 + -0.4
287,652 + +0.5
287,653 - +1.5
287,653 - -1.0
287,653 - +0.3
287,653 - +0.2
287,730 - -0.3
287,730 - +0.3
287,838 - +0.5

Or see this region's nucleotide sequence