Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0237

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0235 and Psyr_0236 overlap by 29 nucleotidesPsyr_0236 and Psyr_0237 are separated by 74 nucleotidesPsyr_0237 and Psyr_0238 are separated by 74 nucleotidesPsyr_0238 and Psyr_0239 are separated by 25 nucleotides Psyr_0235: Psyr_0235 - D-amino acid dehydrogenase small subunit, at 249,112 to 250,413 _0235 Psyr_0236: Psyr_0236 - Endoribonuclease L-PSP, at 250,385 to 250,738 _0236 Psyr_0237: Psyr_0237 - alanine racemase, at 250,813 to 251,886 _0237 Psyr_0238: Psyr_0238 - Helix-turn-helix motif protein, at 251,961 to 252,560 _0238 Psyr_0239: Psyr_0239 - cytochrome c5, at 252,586 to 252,909 _0239 Position (kb) 250 251 252Strain fitness (log2 ratio) -2 -1 0 1 2 3at 249.813 kb on + strand, within Psyr_0235at 249.857 kb on - strand, within Psyr_0235at 249.860 kb on + strand, within Psyr_0235at 249.860 kb on + strand, within Psyr_0235at 249.922 kb on + strand, within Psyr_0235at 250.003 kb on + strand, within Psyr_0235at 250.003 kb on + strand, within Psyr_0235at 250.003 kb on + strand, within Psyr_0235at 250.003 kb on + strand, within Psyr_0235at 250.003 kb on + strand, within Psyr_0235at 250.004 kb on - strand, within Psyr_0235at 250.004 kb on - strand, within Psyr_0235at 250.004 kb on - strand, within Psyr_0235at 250.004 kb on - strand, within Psyr_0235at 250.198 kb on - strand, within Psyr_0235at 250.347 kb on + strandat 250.347 kb on + strandat 250.347 kb on + strandat 250.347 kb on + strandat 250.347 kb on + strandat 250.348 kb on - strandat 250.348 kb on - strandat 250.348 kb on - strandat 250.365 kb on + strandat 250.451 kb on + strand, within Psyr_0236at 250.452 kb on - strand, within Psyr_0236at 250.802 kb on + strandat 250.802 kb on + strandat 251.872 kb on + strandat 251.872 kb on + strandat 251.872 kb on + strandat 251.873 kb on - strandat 251.873 kb on - strandat 251.873 kb on - strandat 251.873 kb on - strandat 251.940 kb on + strandat 251.940 kb on + strandat 251.941 kb on - strandat 251.941 kb on - strandat 251.981 kb on + strandat 251.981 kb on + strandat 252.006 kb on - strandat 252.238 kb on - strand, within Psyr_0238at 252.238 kb on - strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.260 kb on + strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.261 kb on - strand, within Psyr_0238at 252.262 kb on + strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.263 kb on - strand, within Psyr_0238at 252.340 kb on - strand, within Psyr_0238at 252.340 kb on - strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.444 kb on + strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.445 kb on - strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.468 kb on + strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.469 kb on - strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.471 kb on + strand, within Psyr_0238at 252.472 kb on - strand, within Psyr_0238at 252.472 kb on - strand, within Psyr_0238at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239at 252.716 kb on + strand, within Psyr_0239

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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249,813 + Psyr_0235 0.54 +0.3
249,857 - Psyr_0235 0.57 -1.4
249,860 + Psyr_0235 0.57 -1.2
249,860 + Psyr_0235 0.57 -0.8
249,922 + Psyr_0235 0.62 -0.6
250,003 + Psyr_0235 0.68 -0.4
250,003 + Psyr_0235 0.68 -1.1
250,003 + Psyr_0235 0.68 +0.7
250,003 + Psyr_0235 0.68 -1.0
250,003 + Psyr_0235 0.68 -0.2
250,004 - Psyr_0235 0.69 -1.4
250,004 - Psyr_0235 0.69 -1.3
250,004 - Psyr_0235 0.69 -0.8
250,004 - Psyr_0235 0.69 -0.9
250,198 - Psyr_0235 0.83 -0.8
250,347 + -0.9
250,347 + -0.1
250,347 + -0.3
250,347 + +1.3
250,347 + -0.5
250,348 - +1.6
250,348 - -1.8
250,348 - -1.0
250,365 + +0.8
250,451 + Psyr_0236 0.19 +1.2
250,452 - Psyr_0236 0.19 -0.3
250,802 + -1.0
250,802 + -0.3
251,872 + +3.1
251,872 + -0.9
251,872 + +0.1
251,873 - -1.0
251,873 - +0.3
251,873 - +1.3
251,873 - +0.7
251,940 + -0.6
251,940 + +0.1
251,941 - +0.6
251,941 - -1.2
251,981 + -1.1
251,981 + -0.3
252,006 - -1.2
252,238 - Psyr_0238 0.46 +0.6
252,238 - Psyr_0238 0.46 -0.6
252,260 + Psyr_0238 0.50 -0.2
252,260 + Psyr_0238 0.50 -0.9
252,260 + Psyr_0238 0.50 +0.5
252,261 - Psyr_0238 0.50 -0.3
252,261 - Psyr_0238 0.50 -0.2
252,261 - Psyr_0238 0.50 +0.1
252,261 - Psyr_0238 0.50 +0.6
252,261 - Psyr_0238 0.50 +1.6
252,261 - Psyr_0238 0.50 -0.3
252,262 + Psyr_0238 0.50 -2.4
252,263 - Psyr_0238 0.50 -2.2
252,263 - Psyr_0238 0.50 +0.5
252,263 - Psyr_0238 0.50 +0.3
252,263 - Psyr_0238 0.50 -0.0
252,340 - Psyr_0238 0.63 -0.0
252,340 - Psyr_0238 0.63 +0.9
252,444 + Psyr_0238 0.81 -1.3
252,444 + Psyr_0238 0.81 -0.4
252,444 + Psyr_0238 0.81 +0.0
252,444 + Psyr_0238 0.81 +0.1
252,444 + Psyr_0238 0.81 +0.1
252,444 + Psyr_0238 0.81 -0.8
252,444 + Psyr_0238 0.81 +0.3
252,444 + Psyr_0238 0.81 -0.7
252,444 + Psyr_0238 0.81 +1.1
252,444 + Psyr_0238 0.81 +0.0
252,444 + Psyr_0238 0.81 +0.6
252,444 + Psyr_0238 0.81 +0.0
252,444 + Psyr_0238 0.81 -1.2
252,444 + Psyr_0238 0.81 -0.8
252,444 + Psyr_0238 0.81 +1.2
252,444 + Psyr_0238 0.81 -1.0
252,444 + Psyr_0238 0.81 -1.1
252,444 + Psyr_0238 0.81 +0.7
252,444 + Psyr_0238 0.81 +0.0
252,445 - Psyr_0238 0.81 -0.2
252,445 - Psyr_0238 0.81 +0.3
252,445 - Psyr_0238 0.81 +0.7
252,445 - Psyr_0238 0.81 -0.0
252,445 - Psyr_0238 0.81 +0.2
252,445 - Psyr_0238 0.81 -0.1
252,445 - Psyr_0238 0.81 +1.0
252,445 - Psyr_0238 0.81 -1.0
252,468 + Psyr_0238 0.84 +0.6
252,468 + Psyr_0238 0.84 +0.2
252,468 + Psyr_0238 0.84 -0.0
252,468 + Psyr_0238 0.84 +0.0
252,469 - Psyr_0238 0.85 -0.1
252,469 - Psyr_0238 0.85 +0.8
252,469 - Psyr_0238 0.85 -0.9
252,469 - Psyr_0238 0.85 -1.1
252,469 - Psyr_0238 0.85 +1.9
252,471 + Psyr_0238 0.85 -0.1
252,471 + Psyr_0238 0.85 +0.1
252,471 + Psyr_0238 0.85 -0.5
252,472 - Psyr_0238 0.85 +1.2
252,472 - Psyr_0238 0.85 +0.8
252,716 + Psyr_0239 0.40 -0.4
252,716 + Psyr_0239 0.40 +1.3
252,716 + Psyr_0239 0.40 +0.4
252,716 + Psyr_0239 0.40 -0.5
252,716 + Psyr_0239 0.40 +0.1
252,716 + Psyr_0239 0.40 -0.0

Or see this region's nucleotide sequence