Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0221

Experiment: KB with Aristolochic Acid 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0220 and Psyr_0221 are separated by 6 nucleotidesPsyr_0221 and Psyr_0222 are separated by 96 nucleotidesPsyr_0222 and Psyr_0223 are separated by 133 nucleotides Psyr_0220: Psyr_0220 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 234,646 to 235,101 _0220 Psyr_0221: Psyr_0221 - Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase, at 235,108 to 236,355 _0221 Psyr_0222: Psyr_0222 - DNA replication and repair protein RadC, at 236,452 to 237,126 _0222 Psyr_0223: Psyr_0223 - extracellular solute-binding protein, family 5, at 237,260 to 238,846 _0223 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.585 kb on + strandat 234.586 kb on - strandat 234.586 kb on - strandat 234.629 kb on + strandat 234.629 kb on + strandat 234.629 kb on + strandat 234.630 kb on - strandat 234.630 kb on - strandat 234.630 kb on - strandat 234.630 kb on - strandat 234.630 kb on - strandat 234.630 kb on - strandat 234.630 kb on - strandat 234.630 kb on - strandat 235.106 kb on - strandat 235.106 kb on - strandat 235.110 kb on - strandat 235.110 kb on - strandat 235.110 kb on - strandat 236.403 kb on - strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.452 kb on - strandat 236.452 kb on - strandat 236.452 kb on - strandat 236.452 kb on - strandat 236.457 kb on + strandat 236.582 kb on + strand, within Psyr_0222at 236.583 kb on - strand, within Psyr_0222at 236.583 kb on - strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.873 kb on + strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 237.124 kb on + strandat 237.124 kb on + strandat 237.124 kb on + strandat 237.124 kb on + strandat 237.125 kb on - strandat 237.125 kb on - strandat 237.143 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.280 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
remove
234,585 + +1.6
234,586 - -0.5
234,586 - +0.2
234,629 + +0.1
234,629 + +0.1
234,629 + +0.3
234,630 - -0.8
234,630 - -0.1
234,630 - -0.1
234,630 - -0.3
234,630 - +0.4
234,630 - -0.4
234,630 - -0.4
234,630 - +0.2
235,106 - -0.3
235,106 - -1.0
235,110 - -0.4
235,110 - +0.1
235,110 - -0.0
236,403 - +0.2
236,451 + +0.3
236,451 + +0.2
236,451 + +0.9
236,452 - +0.3
236,452 - +0.5
236,452 - -0.4
236,452 - +0.3
236,457 + -0.2
236,582 + Psyr_0222 0.19 +0.2
236,583 - Psyr_0222 0.19 +1.0
236,583 - Psyr_0222 0.19 +0.5
236,785 + Psyr_0222 0.49 +0.2
236,785 + Psyr_0222 0.49 -2.7
236,785 + Psyr_0222 0.49 +0.0
236,785 + Psyr_0222 0.49 -0.6
236,785 + Psyr_0222 0.49 +0.9
236,786 - Psyr_0222 0.49 +0.2
236,786 - Psyr_0222 0.49 +1.0
236,786 - Psyr_0222 0.49 -1.1
236,786 - Psyr_0222 0.49 +0.2
236,873 + Psyr_0222 0.62 +0.4
236,874 - Psyr_0222 0.63 +0.8
236,874 - Psyr_0222 0.63 -0.4
236,874 - Psyr_0222 0.63 -0.2
236,874 - Psyr_0222 0.63 -0.2
236,874 - Psyr_0222 0.63 -0.4
236,902 + Psyr_0222 0.67 -0.1
236,902 + Psyr_0222 0.67 +0.7
236,902 + Psyr_0222 0.67 -0.1
236,902 + Psyr_0222 0.67 +0.3
236,902 + Psyr_0222 0.67 -0.1
236,902 + Psyr_0222 0.67 -2.3
236,902 + Psyr_0222 0.67 +0.6
236,902 + Psyr_0222 0.67 -0.6
236,902 + Psyr_0222 0.67 +0.4
236,902 + Psyr_0222 0.67 +0.8
236,902 + Psyr_0222 0.67 +0.4
236,902 + Psyr_0222 0.67 +0.3
236,903 - Psyr_0222 0.67 -0.6
236,903 - Psyr_0222 0.67 -0.1
236,903 - Psyr_0222 0.67 +0.9
236,903 - Psyr_0222 0.67 -0.8
236,903 - Psyr_0222 0.67 +1.7
236,903 - Psyr_0222 0.67 -2.2
236,903 - Psyr_0222 0.67 +0.3
236,903 - Psyr_0222 0.67 +0.1
236,903 - Psyr_0222 0.67 +0.7
236,903 - Psyr_0222 0.67 -0.0
236,903 - Psyr_0222 0.67 -0.3
236,903 - Psyr_0222 0.67 +0.9
236,906 + Psyr_0222 0.67 -0.0
236,906 + Psyr_0222 0.67 -0.5
236,906 + Psyr_0222 0.67 +0.7
236,906 + Psyr_0222 0.67 +0.0
236,906 + Psyr_0222 0.67 -0.1
236,906 + Psyr_0222 0.67 -0.7
236,906 + Psyr_0222 0.67 -0.5
236,907 - Psyr_0222 0.67 +1.3
236,907 - Psyr_0222 0.67 +2.6
236,907 - Psyr_0222 0.67 -0.2
236,907 - Psyr_0222 0.67 -0.0
236,907 - Psyr_0222 0.67 -0.2
236,907 - Psyr_0222 0.67 -0.6
236,907 - Psyr_0222 0.67 -0.9
236,907 - Psyr_0222 0.67 -1.8
236,907 - Psyr_0222 0.67 -0.0
236,907 - Psyr_0222 0.67 -0.3
237,124 + +0.3
237,124 + +0.2
237,124 + -1.2
237,124 + -0.6
237,125 - -1.3
237,125 - +1.2
237,143 + -0.3
237,261 + +0.4
237,261 + -1.0
237,261 + -0.5
237,261 + -1.2
237,261 + +0.7
237,261 + +0.6
237,261 + -3.0
237,261 + -0.2
237,261 + +1.2
237,261 + +0.6
237,262 - +0.5
237,262 - +1.2
237,262 - +0.3
237,262 - +0.9
237,262 - -0.3
237,280 - -0.8

Or see this region's nucleotide sequence