Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0210

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0209 and Psyr_0210 are separated by 42 nucleotidesPsyr_0210 and Psyr_0211 are separated by 147 nucleotidesPsyr_0211 and Psyr_0212 are separated by 13 nucleotides Psyr_0209: Psyr_0209 - RelA/SpoT protein, at 223,004 to 225,127 _0209 Psyr_0210: Psyr_0210 - DNA-directed RNA polymerase subunit omega, at 225,170 to 225,433 _0210 Psyr_0211: Psyr_0211 - guanylate kinase, at 225,581 to 226,225 _0211 Psyr_0212: Psyr_0212 - Conserved hypothetical protein 255, at 226,239 to 227,102 _0212 Position (kb) 225 226Strain fitness (log2 ratio) -2 -1 0 1at 225.099 kb on - strandat 225.151 kb on - strandat 225.151 kb on - strandat 225.151 kb on - strandat 225.166 kb on - strandat 225.365 kb on - strand, within Psyr_0210at 225.405 kb on - strand, within Psyr_0210at 225.405 kb on - strand, within Psyr_0210at 225.549 kb on - strandat 225.612 kb on + strandat 225.613 kb on - strandat 225.613 kb on - strandat 226.341 kb on - strand, within Psyr_0212at 226.341 kb on - strand, within Psyr_0212at 226.341 kb on - strand, within Psyr_0212at 226.341 kb on - strand, within Psyr_0212at 226.341 kb on - strand, within Psyr_0212at 226.341 kb on - strand, within Psyr_0212at 226.356 kb on - strand, within Psyr_0212

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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225,099 - -1.3
225,151 - +0.8
225,151 - +0.2
225,151 - -1.1
225,166 - -1.0
225,365 - Psyr_0210 0.74 -1.0
225,405 - Psyr_0210 0.89 +0.6
225,405 - Psyr_0210 0.89 -2.1
225,549 - -0.1
225,612 + +1.1
225,613 - -1.1
225,613 - -0.4
226,341 - Psyr_0212 0.12 -0.3
226,341 - Psyr_0212 0.12 +0.7
226,341 - Psyr_0212 0.12 -0.2
226,341 - Psyr_0212 0.12 +0.1
226,341 - Psyr_0212 0.12 +0.3
226,341 - Psyr_0212 0.12 -0.1
226,356 - Psyr_0212 0.14 +0.1

Or see this region's nucleotide sequence