Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0062

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0060 and Psyr_0061 overlap by 1 nucleotidesPsyr_0061 and Psyr_0062 overlap by 4 nucleotidesPsyr_0062 and Psyr_0063 are separated by 232 nucleotidesPsyr_0063 and Psyr_0064 overlap by 4 nucleotides Psyr_0060: Psyr_0060 - Protein of unknown function DUF513, at 59,526 to 60,701 _0060 Psyr_0061: Psyr_0061 - uroporphyrinogen-III synthase, at 60,701 to 61,474 _0061 Psyr_0062: Psyr_0062 - hydroxymethylbilane synthase, at 61,471 to 62,412 _0062 Psyr_0063: Psyr_0063 - Two-component response regulator AlgR, at 62,645 to 63,391 _0063 Psyr_0064: Psyr_0064 - Sensory transduction protein kinase AlgZ, at 63,388 to 64,470 _0064 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1at 60.627 kb on - strandat 60.650 kb on - strandat 60.650 kb on - strandat 60.673 kb on + strandat 60.677 kb on - strandat 60.677 kb on - strandat 60.682 kb on - strandat 60.682 kb on - strandat 60.702 kb on + strandat 61.494 kb on - strandat 61.494 kb on - strandat 62.448 kb on - strandat 62.448 kb on - strandat 62.448 kb on - strandat 62.448 kb on - strandat 62.505 kb on + strandat 62.506 kb on - strandat 62.506 kb on - strandat 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.892 kb on + strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.893 kb on - strand, within Psyr_0063at 62.913 kb on + strand, within Psyr_0063at 62.913 kb on + strand, within Psyr_0063at 62.913 kb on + strand, within Psyr_0063at 62.913 kb on + strand, within Psyr_0063at 62.914 kb on - strand, within Psyr_0063at 62.914 kb on - strand, within Psyr_0063at 62.914 kb on - strand, within Psyr_0063at 62.914 kb on - strand, within Psyr_0063at 62.914 kb on - strand, within Psyr_0063at 62.914 kb on - strand, within Psyr_0063at 62.968 kb on + strand, within Psyr_0063at 62.969 kb on - strand, within Psyr_0063at 63.097 kb on - strand, within Psyr_0063at 63.097 kb on - strand, within Psyr_0063at 63.097 kb on - strand, within Psyr_0063at 63.242 kb on + strand, within Psyr_0063at 63.242 kb on + strand, within Psyr_0063at 63.242 kb on + strand, within Psyr_0063at 63.242 kb on + strand, within Psyr_0063at 63.242 kb on + strand, within Psyr_0063at 63.242 kb on + strand, within Psyr_0063at 63.243 kb on - strand, within Psyr_0063at 63.243 kb on - strand, within Psyr_0063at 63.243 kb on - strand, within Psyr_0063at 63.243 kb on - strand, within Psyr_0063at 63.391 kb on + strandat 63.391 kb on + strandat 63.391 kb on + strandat 63.391 kb on + strandat 63.391 kb on + strandat 63.391 kb on + strandat 63.392 kb on - strandat 63.392 kb on - strandat 63.392 kb on - strandat 63.392 kb on - strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.393 kb on + strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strandat 63.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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60,627 - +0.2
60,650 - +0.6
60,650 - -0.4
60,673 + -0.1
60,677 - -2.2
60,677 - -0.3
60,682 - +0.9
60,682 - -1.1
60,702 + -0.6
61,494 - -0.2
61,494 - +0.4
62,448 - -0.5
62,448 - +0.8
62,448 - +0.5
62,448 - +0.0
62,505 + +0.2
62,506 - +0.4
62,506 - -1.0
62,892 + Psyr_0063 0.33 -0.4
62,892 + Psyr_0063 0.33 +0.3
62,892 + Psyr_0063 0.33 -1.1
62,892 + Psyr_0063 0.33 -0.5
62,892 + Psyr_0063 0.33 -0.3
62,892 + Psyr_0063 0.33 -0.9
62,892 + Psyr_0063 0.33 -0.5
62,892 + Psyr_0063 0.33 -0.2
62,893 - Psyr_0063 0.33 -1.3
62,893 - Psyr_0063 0.33 -0.7
62,893 - Psyr_0063 0.33 +0.2
62,893 - Psyr_0063 0.33 +1.5
62,893 - Psyr_0063 0.33 +0.2
62,893 - Psyr_0063 0.33 +0.1
62,893 - Psyr_0063 0.33 +0.4
62,913 + Psyr_0063 0.36 +0.5
62,913 + Psyr_0063 0.36 -0.7
62,913 + Psyr_0063 0.36 +0.3
62,913 + Psyr_0063 0.36 -0.7
62,914 - Psyr_0063 0.36 -0.5
62,914 - Psyr_0063 0.36 -1.9
62,914 - Psyr_0063 0.36 -1.6
62,914 - Psyr_0063 0.36 -0.1
62,914 - Psyr_0063 0.36 -0.8
62,914 - Psyr_0063 0.36 -1.1
62,968 + Psyr_0063 0.43 -1.0
62,969 - Psyr_0063 0.43 +0.1
63,097 - Psyr_0063 0.61 -0.4
63,097 - Psyr_0063 0.61 -0.2
63,097 - Psyr_0063 0.61 +0.4
63,242 + Psyr_0063 0.80 -0.6
63,242 + Psyr_0063 0.80 +0.0
63,242 + Psyr_0063 0.80 -0.6
63,242 + Psyr_0063 0.80 -0.4
63,242 + Psyr_0063 0.80 +0.0
63,242 + Psyr_0063 0.80 +0.1
63,243 - Psyr_0063 0.80 -0.3
63,243 - Psyr_0063 0.80 -0.8
63,243 - Psyr_0063 0.80 +0.6
63,243 - Psyr_0063 0.80 -2.7
63,391 + +0.4
63,391 + -0.5
63,391 + +0.3
63,391 + -0.8
63,391 + -1.5
63,391 + +0.1
63,392 - +0.5
63,392 - +0.1
63,392 - +0.3
63,392 - +0.2
63,393 + +0.4
63,393 + -0.1
63,393 + +0.1
63,393 + -0.4
63,393 + +0.1
63,393 + -0.4
63,393 + -0.2
63,393 + +0.4
63,393 + -1.2
63,393 + -0.1
63,393 + +0.0
63,393 + +0.0
63,393 + +1.6
63,393 + +0.1
63,394 - +1.5
63,394 - -0.0
63,394 - -0.2
63,394 - -0.2
63,394 - -0.3
63,394 - +0.1
63,394 - -0.1
63,394 - +0.5
63,394 - +0.7
63,394 - -0.5
63,394 - -0.2
63,394 - -1.3
63,394 - +0.6
63,394 - -0.4
63,394 - +0.4
63,394 - -0.2
63,394 - +1.4
63,394 - +1.3
63,394 - -0.6

Or see this region's nucleotide sequence