Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0037

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0035 and Psyr_0036 are separated by 0 nucleotidesPsyr_0036 and Psyr_0037 are separated by 165 nucleotidesPsyr_0037 and Psyr_0038 are separated by 150 nucleotidesPsyr_0038 and Psyr_0039 are separated by 137 nucleotides Psyr_0035: Psyr_0035 - regulatory protein, LysR:LysR, substrate-binding protein, at 39,307 to 40,263 _0035 Psyr_0036: Psyr_0036 - protein of unknown function DUF883, at 40,264 to 40,590 _0036 Psyr_0037: Psyr_0037 - Protein of unknown function DUF1458, at 40,756 to 40,971 _0037 Psyr_0038: Psyr_0038 - Protein of unknown function DUF1161, at 41,122 to 41,346 _0038 Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485 _0039 Position (kb) 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.792 kb on - strand, within Psyr_0035at 39.792 kb on - strand, within Psyr_0035at 39.792 kb on - strand, within Psyr_0035at 40.033 kb on + strand, within Psyr_0035at 40.033 kb on + strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.034 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.037 kb on - strand, within Psyr_0035at 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.289 kb on + strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.290 kb on - strandat 40.355 kb on + strand, within Psyr_0036at 40.356 kb on - strand, within Psyr_0036at 40.356 kb on - strand, within Psyr_0036at 40.406 kb on + strand, within Psyr_0036at 40.406 kb on + strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.407 kb on - strand, within Psyr_0036at 40.552 kb on - strand, within Psyr_0036at 40.552 kb on - strand, within Psyr_0036at 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.581 kb on + strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.582 kb on - strandat 40.584 kb on + strandat 40.584 kb on + strandat 40.720 kb on + strandat 40.720 kb on + strandat 40.720 kb on + strandat 40.720 kb on + strandat 40.721 kb on - strandat 40.721 kb on - strandat 40.721 kb on - strandat 40.721 kb on - strandat 40.722 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.774 kb on + strandat 40.775 kb on - strandat 40.775 kb on - strandat 40.775 kb on - strandat 40.934 kb on + strand, within Psyr_0037at 40.934 kb on + strand, within Psyr_0037at 40.935 kb on - strand, within Psyr_0037at 40.969 kb on + strandat 40.969 kb on + strandat 40.970 kb on - strandat 40.970 kb on - strandat 41.006 kb on + strandat 41.016 kb on + strandat 41.017 kb on - strandat 41.017 kb on - strandat 41.030 kb on + strandat 41.030 kb on + strandat 41.144 kb on + strandat 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.248 kb on + strand, within Psyr_0038at 41.249 kb on - strand, within Psyr_0038at 41.249 kb on - strand, within Psyr_0038at 41.515 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.542 kb on + strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.543 kb on - strandat 41.555 kb on + strandat 41.655 kb on + strand, within Psyr_0039at 41.756 kb on - strand, within Psyr_0039at 41.774 kb on - strand, within Psyr_0039at 41.774 kb on - strand, within Psyr_0039at 41.774 kb on - strand, within Psyr_0039at 41.827 kb on + strand, within Psyr_0039at 41.828 kb on - strand, within Psyr_0039at 41.828 kb on - strand, within Psyr_0039at 41.828 kb on - strand, within Psyr_0039at 41.869 kb on + strand, within Psyr_0039at 41.893 kb on + strand, within Psyr_0039at 41.894 kb on - strand, within Psyr_0039at 41.894 kb on - strand, within Psyr_0039

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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39,792 - Psyr_0035 0.51 +0.2
39,792 - Psyr_0035 0.51 -0.7
39,792 - Psyr_0035 0.51 -0.4
40,033 + Psyr_0035 0.76 -0.2
40,033 + Psyr_0035 0.76 -0.1
40,034 - Psyr_0035 0.76 +0.0
40,034 - Psyr_0035 0.76 -1.7
40,034 - Psyr_0035 0.76 +0.2
40,034 - Psyr_0035 0.76 +0.5
40,037 - Psyr_0035 0.76 -0.5
40,037 - Psyr_0035 0.76 -0.1
40,037 - Psyr_0035 0.76 -1.0
40,037 - Psyr_0035 0.76 -1.2
40,037 - Psyr_0035 0.76 -1.0
40,289 + -0.3
40,289 + -2.0
40,289 + +0.4
40,289 + -0.7
40,289 + +0.6
40,289 + +0.6
40,289 + -0.3
40,289 + +1.3
40,289 + -0.6
40,289 + +0.8
40,290 - +0.7
40,290 - -0.6
40,290 - -0.7
40,290 - -0.2
40,290 - -3.3
40,290 - -0.0
40,290 - -2.0
40,290 - +0.4
40,355 + Psyr_0036 0.28 +0.2
40,356 - Psyr_0036 0.28 -0.2
40,356 - Psyr_0036 0.28 -1.0
40,406 + Psyr_0036 0.43 +0.9
40,406 + Psyr_0036 0.43 -0.3
40,407 - Psyr_0036 0.44 -0.1
40,407 - Psyr_0036 0.44 -0.4
40,407 - Psyr_0036 0.44 +0.7
40,407 - Psyr_0036 0.44 -0.0
40,407 - Psyr_0036 0.44 +0.5
40,552 - Psyr_0036 0.88 -0.3
40,552 - Psyr_0036 0.88 +0.3
40,581 + -0.6
40,581 + +0.1
40,581 + -0.2
40,581 + +0.4
40,581 + -0.4
40,581 + -1.4
40,581 + +0.2
40,581 + -0.9
40,582 - -0.6
40,582 - +0.0
40,582 - -0.2
40,582 - +0.9
40,582 - +0.1
40,582 - -0.9
40,582 - +0.7
40,582 - +0.6
40,582 - +0.9
40,584 + +0.6
40,584 + -2.0
40,720 + +0.8
40,720 + -1.1
40,720 + -0.1
40,720 + +1.1
40,721 - +0.4
40,721 - +0.1
40,721 - -0.5
40,721 - +0.7
40,722 + +0.9
40,774 + -0.6
40,774 + +0.2
40,774 + +0.5
40,774 + +0.1
40,774 + +0.5
40,774 + -0.5
40,774 + +0.4
40,775 - -0.0
40,775 - +0.3
40,775 - -1.2
40,934 + Psyr_0037 0.82 -0.5
40,934 + Psyr_0037 0.82 -0.6
40,935 - Psyr_0037 0.83 -1.1
40,969 + -0.4
40,969 + +0.6
40,970 - -0.2
40,970 - -0.3
41,006 + +0.3
41,016 + +0.5
41,017 - +0.8
41,017 - +0.2
41,030 + -0.4
41,030 + -0.2
41,144 + +0.1
41,248 + Psyr_0038 0.56 -0.2
41,248 + Psyr_0038 0.56 +0.3
41,248 + Psyr_0038 0.56 +0.2
41,248 + Psyr_0038 0.56 +0.7
41,248 + Psyr_0038 0.56 +0.4
41,248 + Psyr_0038 0.56 -0.0
41,249 - Psyr_0038 0.56 +0.0
41,249 - Psyr_0038 0.56 +0.2
41,515 + +0.7
41,542 + -0.7
41,542 + +2.0
41,542 + +0.7
41,542 + -1.4
41,542 + -0.7
41,542 + -0.8
41,542 + -1.3
41,542 + +0.6
41,542 + -0.6
41,543 - -0.2
41,543 - -0.3
41,543 - -0.2
41,543 - +0.8
41,543 - -0.3
41,543 - +0.6
41,543 - -0.3
41,543 - +0.4
41,543 - +0.2
41,543 - -0.1
41,543 - +0.8
41,543 - +0.5
41,543 - -0.6
41,543 - +0.3
41,543 - -0.6
41,555 + -0.8
41,655 + Psyr_0039 0.17 +0.6
41,756 - Psyr_0039 0.27 -0.1
41,774 - Psyr_0039 0.29 +0.8
41,774 - Psyr_0039 0.29 -0.3
41,774 - Psyr_0039 0.29 -1.2
41,827 + Psyr_0039 0.34 +0.1
41,828 - Psyr_0039 0.34 +0.6
41,828 - Psyr_0039 0.34 +0.1
41,828 - Psyr_0039 0.34 +0.6
41,869 + Psyr_0039 0.38 -0.1
41,893 + Psyr_0039 0.41 -1.2
41,894 - Psyr_0039 0.41 +0.7
41,894 - Psyr_0039 0.41 -0.2

Or see this region's nucleotide sequence