Experiment: KB with Aristolochic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0023 and Psyr_0024 are separated by 171 nucleotides Psyr_0024 and Psyr_0025 overlap by 1 nucleotides
Psyr_0023: Psyr_0023 - Zinc-containing alcohol dehydrogenase superfamily, at 26,572 to 27,549
_0023
Psyr_0024: Psyr_0024 - coproporphyrinogen oxidase, at 27,721 to 28,635
_0024
Psyr_0025: Psyr_0025 - shikimate dehydrogenase, at 28,635 to 29,459
_0025
Position (kb) 27
28
29 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.771 kb on + strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.772 kb on - strand, within Psyr_0023 at 26.910 kb on - strand, within Psyr_0023 at 26.975 kb on + strand, within Psyr_0023 at 26.975 kb on + strand, within Psyr_0023 at 26.975 kb on + strand, within Psyr_0023 at 26.975 kb on + strand, within Psyr_0023 at 27.143 kb on + strand, within Psyr_0023 at 27.143 kb on + strand, within Psyr_0023 at 27.143 kb on + strand, within Psyr_0023 at 27.144 kb on - strand, within Psyr_0023 at 27.144 kb on - strand, within Psyr_0023 at 27.144 kb on - strand, within Psyr_0023 at 27.161 kb on + strand, within Psyr_0023 at 27.161 kb on + strand, within Psyr_0023 at 27.161 kb on + strand, within Psyr_0023 at 27.161 kb on + strand, within Psyr_0023 at 27.162 kb on - strand, within Psyr_0023 at 27.267 kb on - strand, within Psyr_0023 at 27.267 kb on - strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.413 kb on + strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.414 kb on - strand, within Psyr_0023 at 27.418 kb on - strand, within Psyr_0023 at 27.497 kb on + strand at 27.497 kb on + strand at 27.497 kb on + strand at 27.497 kb on + strand at 27.497 kb on + strand at 27.498 kb on - strand at 27.498 kb on - strand at 27.498 kb on - strand at 27.498 kb on - strand at 27.569 kb on + strand at 27.570 kb on - strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.644 kb on + strand at 27.645 kb on - strand at 27.645 kb on - strand at 27.645 kb on - strand at 27.645 kb on - strand at 29.088 kb on - strand, within Psyr_0025 at 29.088 kb on - strand, within Psyr_0025 at 29.140 kb on + strand, within Psyr_0025 at 29.269 kb on - strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.280 kb on + strand, within Psyr_0025 at 29.281 kb on - strand, within Psyr_0025 at 29.281 kb on - strand, within Psyr_0025 at 29.466 kb on - strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.497 kb on + strand at 29.498 kb on - strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.499 kb on + strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.500 kb on - strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.503 kb on + strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.504 kb on - strand at 29.610 kb on + strand at 29.610 kb on + strand at 29.610 kb on + strand at 29.611 kb on - strand at 29.611 kb on - strand at 29.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM remove 26,771 + Psyr_0023 0.20 -0.1 26,771 + Psyr_0023 0.20 -0.8 26,771 + Psyr_0023 0.20 -0.3 26,771 + Psyr_0023 0.20 +0.1 26,771 + Psyr_0023 0.20 -0.9 26,771 + Psyr_0023 0.20 +0.3 26,771 + Psyr_0023 0.20 +0.1 26,771 + Psyr_0023 0.20 +1.2 26,772 - Psyr_0023 0.20 +0.4 26,772 - Psyr_0023 0.20 +1.0 26,772 - Psyr_0023 0.20 +0.3 26,772 - Psyr_0023 0.20 +0.6 26,772 - Psyr_0023 0.20 -0.0 26,772 - Psyr_0023 0.20 +0.6 26,772 - Psyr_0023 0.20 -0.8 26,772 - Psyr_0023 0.20 -1.1 26,772 - Psyr_0023 0.20 -1.6 26,910 - Psyr_0023 0.35 +0.8 26,975 + Psyr_0023 0.41 +1.0 26,975 + Psyr_0023 0.41 +0.6 26,975 + Psyr_0023 0.41 +0.2 26,975 + Psyr_0023 0.41 -0.9 27,143 + Psyr_0023 0.58 -0.1 27,143 + Psyr_0023 0.58 +0.1 27,143 + Psyr_0023 0.58 +0.2 27,144 - Psyr_0023 0.58 -0.1 27,144 - Psyr_0023 0.58 +0.1 27,144 - Psyr_0023 0.58 -0.9 27,161 + Psyr_0023 0.60 +0.2 27,161 + Psyr_0023 0.60 +0.8 27,161 + Psyr_0023 0.60 +0.1 27,161 + Psyr_0023 0.60 -0.3 27,162 - Psyr_0023 0.60 -0.5 27,267 - Psyr_0023 0.71 +1.4 27,267 - Psyr_0023 0.71 -1.9 27,413 + Psyr_0023 0.86 +0.0 27,413 + Psyr_0023 0.86 -1.1 27,413 + Psyr_0023 0.86 +0.3 27,413 + Psyr_0023 0.86 +0.1 27,413 + Psyr_0023 0.86 -1.0 27,413 + Psyr_0023 0.86 +0.4 27,413 + Psyr_0023 0.86 +0.0 27,413 + Psyr_0023 0.86 -0.7 27,413 + Psyr_0023 0.86 -1.2 27,413 + Psyr_0023 0.86 -1.8 27,413 + Psyr_0023 0.86 -0.7 27,413 + Psyr_0023 0.86 +1.2 27,413 + Psyr_0023 0.86 +0.8 27,414 - Psyr_0023 0.86 -0.6 27,414 - Psyr_0023 0.86 +0.6 27,414 - Psyr_0023 0.86 +0.3 27,414 - Psyr_0023 0.86 -0.2 27,414 - Psyr_0023 0.86 -0.8 27,414 - Psyr_0023 0.86 +0.6 27,414 - Psyr_0023 0.86 +1.3 27,418 - Psyr_0023 0.87 +0.2 27,497 + -2.9 27,497 + -1.3 27,497 + -0.4 27,497 + +0.5 27,497 + -0.9 27,498 - +0.4 27,498 - -0.3 27,498 - +0.5 27,498 - -1.4 27,569 + +0.5 27,570 - +1.0 27,644 + +0.7 27,644 + -0.4 27,644 + +0.3 27,644 + -1.1 27,644 + -0.3 27,645 - -0.2 27,645 - -0.3 27,645 - +0.9 27,645 - -0.1 29,088 - Psyr_0025 0.55 +1.5 29,088 - Psyr_0025 0.55 +0.4 29,140 + Psyr_0025 0.61 -0.7 29,269 - Psyr_0025 0.77 +0.1 29,280 + Psyr_0025 0.78 +0.8 29,280 + Psyr_0025 0.78 -3.8 29,280 + Psyr_0025 0.78 -0.6 29,280 + Psyr_0025 0.78 +0.6 29,280 + Psyr_0025 0.78 -0.4 29,281 - Psyr_0025 0.78 -1.0 29,281 - Psyr_0025 0.78 +0.4 29,466 - -1.0 29,497 + -0.6 29,497 + +0.2 29,497 + -1.0 29,497 + +0.2 29,497 + -0.2 29,498 - -1.3 29,499 + +0.7 29,499 + +0.4 29,499 + -0.3 29,499 + -0.6 29,499 + -1.1 29,499 + +1.2 29,499 + +0.4 29,499 + -0.8 29,499 + -0.3 29,499 + +0.0 29,499 + +0.1 29,499 + +0.1 29,499 + +0.9 29,499 + -0.4 29,499 + -0.0 29,499 + +0.7 29,499 + +0.1 29,500 - -0.2 29,500 - -0.6 29,500 - -0.7 29,500 - +0.4 29,500 - -0.3 29,500 - -0.0 29,500 - -0.2 29,500 - -0.1 29,500 - +0.8 29,500 - -0.8 29,500 - -1.5 29,500 - -0.1 29,500 - -1.0 29,503 + -1.4 29,503 + -0.5 29,503 + +0.2 29,503 + -0.5 29,503 + +0.6 29,503 + +1.6 29,503 + +1.0 29,503 + -0.3 29,503 + +0.4 29,503 + -1.5 29,503 + -0.0 29,503 + -0.5 29,503 + -0.3 29,503 + -0.9 29,503 + -0.3 29,503 + -0.0 29,503 + -1.1 29,503 + -0.1 29,503 + +0.5 29,503 + +0.8 29,503 + -0.1 29,503 + -0.1 29,504 - -0.3 29,504 - +0.8 29,504 - +0.1 29,504 - +0.9 29,504 - -0.4 29,504 - -1.5 29,504 - -0.2 29,504 - -0.4 29,504 - +0.4 29,504 - +0.5 29,504 - +1.0 29,504 - -0.7 29,504 - +1.0 29,610 + -1.2 29,610 + -0.6 29,610 + -0.2 29,611 - +0.2 29,611 - -1.0 29,611 - +1.1
Or see this region's nucleotide sequence